CF835079

Overview
NameCF835079
Unique NameCF835079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1776 contig Csv1_Contig1776:633..1200. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.021e-28
Identity = 58/108 (53.70%), Postives = 75/108 (69.44%), Query Frame = 1
Query:   88 LRDGQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIA 411
            + +G V   HS   + +KL  A    RLV + FTATWCGPCR I P+F  L+ K+ ++ FLKVD+DE RDVA  W++ ++PTF FIK+GK VDKVVGA K  LERK+A
Sbjct:    1 MAEGNVFACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKVA 108          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.475e-27
Identity = 54/110 (49.09%), Postives = 78/110 (70.91%), Query Frame = 1
Query:   94 DGQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHAG 423
            +G V+  H+  EF+ ++  A  A ++VI+ FTA+WCGPCRFI+P+F   A K+   VFLKVD+DE ++VA ++N+ ++PTF FIK+G E DKVVGA K  L+  I +H G
Sbjct:    5 EGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVG 114          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.475e-27
Identity = 54/110 (49.09%), Postives = 78/110 (70.91%), Query Frame = 1
Query:   94 DGQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHAG 423
            +G V+  H+  EF+ ++  A  A ++VI+ FTA+WCGPCRFI+P+F   A K+   VFLKVD+DE ++VA ++N+ ++PTF FIK+G E DKVVGA K  L+  I +H G
Sbjct:    5 EGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVG 114          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.516e-27
Identity = 52/109 (47.71%), Postives = 75/109 (68.81%), Query Frame = 1
Query:   94 DGQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 420
            +GQV G H   E+           +LV++ FTA+WCGPCRFI+P+  ++A K   V+FLKVD+DE + V+  W++ ++PTF FIK+GKEVD+VVGA K  L++ I +HA
Sbjct:   11 EGQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHA 119          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.744e-26
Identity = 54/108 (50.00%), Postives = 74/108 (68.52%), Query Frame = 1
Query:   94 DGQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 417
            +GQV+  H+   +  +L  A  +  LV++ FTA+WCGPCRFI+P F +LA K   V+FLKVD DE + VA+ W I ++PTF F+K GK +DKVVGA K  L+  IA+H
Sbjct:    5 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 112          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.803e-25
Identity = 52/108 (48.15%), Postives = 71/108 (65.74%), Query Frame = 1
Query:   94 DGQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 417
            +GQV+G H+   +  +L        L+++ FTA+WCGPCRFI+P    LA K   V FLKVD+DE + VA  W + S+PTF F+K GK +DKVVGA K  L++ IA+H
Sbjct:    5 EGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKH 112          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.803e-25
Identity = 51/108 (47.22%), Postives = 73/108 (67.59%), Query Frame = 1
Query:   94 DGQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 417
            +GQV+G+H+   +   L       +L+++ FTA+WCGPC+FI+  +  LA K   V FLKVD+DE + VAT W + ++PTF F+K GK VDKVVGA K  L++ IA+H
Sbjct:    4 EGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKH 111          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 1.526e-24
Identity = 48/110 (43.64%), Postives = 76/110 (69.09%), Query Frame = 1
Query:   97 GQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHAGQ 426
            G+V+ +HS  ++  ++  A  A +LV++ FTA+WCGPCR ++P+F +LA K+   VFLKVD+DE + +A ++++ ++PTF F+K G   D+VVGA K  L  K+  HA Q
Sbjct:   18 GEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKVGLHAAQ 127          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: TRXH_BRARA (Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.574e-24
Identity = 47/108 (43.52%), Postives = 75/108 (69.44%), Query Frame = 1
Query:   97 GQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 420
            G+V+  H+  ++  KL AA  + +L+++ FTA WC PCRFI+P+F  LA K+  VVF KVD+DE   VA  +++ ++PTF ++K  +++DKVVGA K  +E K+ +H+
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAKEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHS 118          
BLAST of CF835079 vs. ExPASy Swiss-Prot
Match: TRXH_BRAOL (Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.574e-24
Identity = 47/108 (43.52%), Postives = 75/108 (69.44%), Query Frame = 1
Query:   97 GQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 420
            G+V+  H+  ++  KL AA  + +L+++ FTA WC PCRFI+P+F  LA K+  VVF KVD+DE   VA  +++ ++PTF ++K  +++DKVVGA K  +E K+ +H+
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHS 118          
The following BLAST results are available for this feature:
BLAST of CF835079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
TRXH_PICMA1.021e-2853.70Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH_ORYSJ1.475e-2749.09Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI1.475e-2749.09Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH1_TOBAC2.516e-2747.71Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH1_ARATH4.744e-2650.00Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_RICCO1.803e-2548.15Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH2_TOBAC1.803e-2547.22Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH_WHEAT1.526e-2443.64Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH_BRARA7.574e-2443.52Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 ... [more]
TRXH_BRAOL7.574e-2443.52Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06K03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835079 ID=CF835079; Name=CF835079; organism=Citrus sinensis; type=EST; length=568bp
CGGCTGCGTAAAGAAAGGGAGCTAAAAAATTTTGAACGTGAGAGGCAAAG
AAAACAAGCTGGAGCCGATCGAGAAGCTTTGTCTGGTTTAAGGGATGGGC
AAGTAATGGGTATTCACTCAGCTAGTGAATTTGAAACTAAGTTGAATGCT
GCTACTAGAGCATTGCGCCTGGTGATTCTGTACTTTACTGCAACATGGTG
CGGGCCCTGCCGTTTCATTTCTCCTCTTTTTACAAACTTAGCCTCAAAAT
ACACGAAGGTTGTTTTCTTGAAAGTTGACATAGATGAGGCAAGAGATGTA
GCTACACGCTGGAATATTGGTTCTGTTCCCACCTTTTTCTTCATAAAGAA
TGGTAAGGAAGTTGACAAGGTTGTCGGGGCTGATAAAAGTGCACTTGAAA
GGAAGATTGCACAACATGCTGGCCAGTAAAACCACTCCTGAATAATGAGA
ACTTTAGAGTAATCTCTGCTTGCAAGCCTTTCCTACCCATTTGTTTGCCA
AGCAAATAATGTCTGATAAAATTTCAGTATTTGAATAAAAATAACTTGCT
CCAAAAAAAAAAAAAAAA
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