CF835095

Overview
NameCF835095
Unique NameCF835095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835095_ssr374 microsatellite CF835095_ssr374:374..388. BLAST: Citrus ESTs to Prunus persica proteins V1
CF835095_ssr75 microsatellite CF835095_ssr75:75..89. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1095 contig Csv1_Contig1095:1..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835095 vs. ExPASy Swiss-Prot
Match: RHA2A_ARATH (RING-H2 zinc finger protein RHA2a OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.537e-31
Identity = 80/182 (43.96%), Postives = 100/182 (54.95%), Query Frame = 1 
Query:  130 MGLHGQXXXXXXXXXXXXXVALIANCFGNLRSLLFSLLHSVGMTRVDPVQNNPAGP----HVGSGLASLIVLAEQLNKNRAFSXXXXXXXXXXXXXDNCCCGQGVASSAAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEERVWNTRRRVGGDLIQWFSL 663
            MGL GQ             ++L+A    +LRS L  L            ++NP  P     + SGLA++IVLA+QL+ NR FS                 CG G      GSDC+VCL  L++GE VRKL+CRHVFHK CL+GWLH  NF CPLCRS +VS++ V  T+R VG DLI  FSL
Sbjct:    1 MGLQGQLSDVSSDSIPLMLLSLLAVFINHLRSFLLRLTS----------KSNPNLPVDDVSIASGLANIIVLADQLSLNRLFSYR---------------CGDG---GGGGSDCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDDCVSKTQRSVGRDLISCFSL 154
[Close]
BLAST of CF835095 vs. ExPASy Swiss-Prot
Match: RHA2B_ARATH (RING-H2 zinc finger protein RHA2b OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.724e-23
Identity = 66/156 (42.31%), Postives = 79/156 (50.64%), Query Frame = 1 
Query:  130 MGLHGQXXXXXXXXXXXXXVALIANCFGNLRSLLFSLLHSVGMTRVDPVQNNPAGPHVGSGLASLIVLAEQLNKNRAFSXXXXXXXXXXXXXDNCCCGQGVASSAAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVV 597
            MGL GQ             +AL+A  F ++RSLL                  P+   V    ++L VLA+QLN NR FS                       S  A SDC+VCL  L+ GE VRKLDCRHVFHK CL+GWL HLNFNCPLCRSP++
Sbjct:    1 MGLQGQLSDVSSDSIPLMLLALLATFFRHVRSLLLF----------------PSSAPVVVVTSNLSVLADQLNLNRLFSYRY--------------------SDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLL 120
The following BLAST results are available for this feature:
BLAST of CF835095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RHA2A_ARATH8.537e-3143.96RING-H2 zinc finger protein RHA2a OS=Arabidopsis t... [more]
RHA2B_ARATH1.724e-2342.31RING-H2 zinc finger protein RHA2b OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06K15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06K15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835095 ID=CF835095; Name=CF835095; organism=Citrus sinensis; type=EST; length=762bp
CCAATTTCTCTCCTATCTCTTTATAAAGAAAGAATCGGCCACCCTCAATT
CCATCCGCAAACCCACACTCACCCACCAGACCAGACCAGACCCAGTAACC
AAATTATTAAAAGAAAAAAAAAAACCATCATGGGACTCCACGGCCAGCTG
ATCGACTTGTCGTCCGATTCACTTCCACTCCTCATCGTCGCCCTCATCGC
CAACTGCTTCGGCAACCTCCGCTCTCTCCTCTTCAGCCTCCTCCACTCCG
TGGGCATGACCCGAGTCGATCCGGTTCAGAATAACCCGGCCGGCCCACAC
GTCGGATCGGGTCTCGCTAGCCTCATAGTCCTCGCCGAGCAACTGAATAA
AAACCGGGCCTTTTCTTATAAATACAACAACAACAACAATATTAATAAAA
TCAATGATAATTGTTGCTGCGGTCAGGGGGTGGCAAGTAGCGCTGCCGGT
AGTGATTGCATGGTGTGCTTGTGCACGCTAAGAGATGGCGAGCTCGTTAG
GAAGCTCGACTGCCGCCACGTGTTTCACAAGGATTGCCTTGACGGCTGGC
TTCATCATCTCAATTTTAACTGTCCGCTTTGCAGATCGCCGGTTGTTTCC
GAAGAGCGCGTCTGGAACACGCGGAGGCGAGTCGGCGGGGATTTGATTCA
GTGGTTCTCCTTGCGTTAATGTACATCAGAAGCATCTCCATGATTGCATA
TTGGTTTTGATGGTTCAATGATGCATCCGCCACCCCCCATGATTCTCTTT
GATGGTTGATGC
back to top