CF835104

Overview
NameCF835104
Unique NameCF835104
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4437 contig Csv1_Contig4437:316..950. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835104 vs. ExPASy Swiss-Prot
Match: DNAJ_NITSB (Chaperone protein dnaJ OS=Nitratiruptor sp. (strain SB155-2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.748e-12
Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = -3 
Query:  307 KDASFFDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDGGLYDPLEEEDEDFYGFVQEMVSMMNNVKAEGDSFEDLQRMFVEMVDGMSF 633
            ++ASF +I+ AY KLA+K+HPDR+  NP    EA+ +F+ I EAY VLSDE KR++YD   Y     E++ F GF Q+             SF+D+   F E V G +F
Sbjct:   14 RNASFEEIKKAYRKLALKYHPDRNPDNP----EAEEKFKLINEAYQVLSDEEKRALYD--QYGKAGLENQGFSGFNQK-------------SFDDIMDFF-ESVFGETF 102
The following BLAST results are available for this feature:
BLAST of CF835104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DNAJ_NITSB3.748e-1242.20Chaperone protein dnaJ OS=Nitratiruptor sp. (strai... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06K24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06K24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835104 ID=CF835104; Name=CF835104; organism=Citrus sinensis; type=EST; length=638bp
TTTTTTTTTTTTTTTTTAATAAAAGAGATTTTATTTATAAAGAAACCTAT
TACGGTCCAAATGCTAACACCCCCGGAGATTTAAAAAAACAAAAAAAATT
CTTAAACTACCCACCCCCAACATAAGGGATTAATTTGAAGATTAAAACAA
AATGGGGGGAATTGATCAACAACATCATCATTAGCTTGAATGATCAGAGA
TGATCCAGAGCGATTGTCACCAACGAAAAGTACCCCGCTTGGCCGCTTTA
CCCTTTGATGTGTTGACACATGCTCTTTGCGCGTCCGTAGGATCATAATT
AAAGTCGAAGCTCATCCCATCCACCATTTCCACGAACATCCTTTGGAGGT
CCTCAAAACTGTCCCCCTCGGCTTTAACATTATTCATCATGGAGACCATC
TCTTGCACAAAACCATAGAAGTCCTCATCTTCTTCCTCAAGGGGATCATA
AAGCCCACCATCGTACATTGACCTCTTGTTCTCATCAGAGAGGACGGAGT
AAGCTTCTTGAATTTGCTGAAACCGGCATTTGGCTTCCCCGGCCACTCCC
GGGTTCTTCGCACTCCTATCCGGATGCCATTTCATGGCGAGCTTGTGATA
AGCGGAGCGAATGTCAAAGAAGGAGGCGTCCTTGCAAA
back to top