CF835114

Overview
NameCF835114
Unique NameCF835114
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig444 contig Csv1_Contig444:151..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS_SOLLC (Plastocyanin, chloroplastic OS=Solanum lycopersicum GN=PETE PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.525e-49
Identity = 95/141 (67.38%), Postives = 113/141 (80.14%), Query Frame = -3
Query:  174 GSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTVN 596
            G++ K +A+ V +L++KA+LKDVG                 A+EVLLGGDDGSLAF+P +FSVS+GEKI FKNNAGFPHNVVFDEDEIP+GVD SKISMS EDLLN  GETY+VTL+EKGTY+ YC+PHQGAGMVG+VTVN
Sbjct:   30 GASAKVAAAPVARLTVKASLKDVGAVVAATAVSAMLASNAMALEVLLGGDDGSLAFIPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAGVDASKISMSEEDLLNAAGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN 170          
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS_SPIOL (Plastocyanin, chloroplastic OS=Spinacia oleracea GN=PETE PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 7.719e-49
Identity = 96/135 (71.11%), Postives = 108/135 (80.00%), Query Frame = -3
Query:  174 SASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTVN 578
            + +AVP+LS+KA+LK+VG                 A+EVLLGG DGSLAF+P  FSV+SGE+IVFKNNAGFPHNVVFDEDEIPSGVD +KISMS EDLLN PGETY VTLTEKGTY  YCSPHQGAGMVG+VTVN
Sbjct:   34 TTTAVPRLSVKASLKNVGAAVVATAAAGLLAGNAMAVEVLLGGGDGSLAFLPGDFSVASGEEIVFKNNAGFPHNVVFDEDEIPSGVDAAKISMSEEDLLNAPGETYKVTLTEKGTYKFYCSPHQGAGMVGKVTVN 168          
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS1_POPNI (Plastocyanin A, chloroplastic OS=Populus nigra GN=PETE PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 6.534e-48
Identity = 96/142 (67.61%), Postives = 108/142 (76.06%), Query Frame = -3
Query:  174 VGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTVN 599
            V ++ K SAS +P+LSIKA++KDVG                 AI+VLLG DDGSLAFVPS FS+S GEKIVFKNNAGFPHN+VFDED IPSGVD SKISMS EDLLN  GET+ V L+ KG YS YCSPHQGAGMVG+VTVN
Sbjct:   27 VSASAKVSASPLPRLSIKASMKDVGAAVVATAASAMIASNAMAIDVLLGADDGSLAFVPSEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFEVALSNKGEYSFYCSPHQGAGMVGKVTVN 168          
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS2_POPNI (Plastocyanin B, chloroplastic OS=Populus nigra GN=PETE PE=1 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 1.609e-46
Identity = 93/142 (65.49%), Postives = 109/142 (76.76%), Query Frame = -3
Query:  174 VGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTVN 599
            V ++ K SAS +P+LSIKA+LK+VG                 A++VLLG DDGSLAFVPS FSV +GEKIVFKNNAGFPHNV+FDED +PSGVDVSKISMS EDLLN  GET+ V L++KG Y+ YCSPHQGAGMVG+V VN
Sbjct:   27 VSASAKVSASPLPRLSIKASLKEVGAAVVATAASAMIASNAMAVDVLLGADDGSLAFVPSEFSVPAGEKIVFKNNAGFPHNVLFDEDAVPSGVDVSKISMSEEDLLNAKGETFEVALSDKGEYTFYCSPHQGAGMVGKVIVN 168          
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS2_ARATH (Plastocyanin major isoform, chloroplastic OS=Arabidopsis thaliana GN=DRT112 PE=1 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 6.116e-46
Identity = 94/148 (63.51%), Postives = 111/148 (75.00%), Query Frame = -3
Query:  174 STMKASAS--------AVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTVN 593
            ST+K+SA+        A PKL++K++LK+ G                 AIEVLLGG DGSLAF+P+ FS++ GEKIVFKNNAG+PHNVVFDEDEIPSGVDV+KISM  +DLLNG GETY V LTE GTYS YC+PHQGAGMVG+VTVN
Sbjct:   20 STIKSSATVRIQTAAVASPKLTVKSSLKNFGVAAVAAAASIALAGNAMAIEVLLGGGDGSLAFIPNDFSIAKGEKIVFKNNAGYPHNVVFDEDEIPSGVDVAKISMDEQDLLNGAGETYEVALTEPGTYSFYCAPHQGAGMVGKVTVN 167          
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS_SILPR (Plastocyanin, chloroplastic OS=Silene pratensis GN=PETE PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.035e-45
Identity = 90/134 (67.16%), Postives = 101/134 (75.37%), Query Frame = -3
Query:  174 ASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTVN 575
            A A P++SIKA+LKDVG                 A EVLLG  DG LAFVPS  S++SGEKI FKNNAGFPHNVVFDEDE+P+GVDV+KISM  EDLLN PGE Y+VTLTEKGTY  YC+PH GAGMVG+VTVN
Sbjct:   32 AVATPRMSIKASLKDVGVVVAATAAAGILAGNAMAAEVLLGSSDGGLAFVPSDLSIASGEKITFKNNAGFPHNVVFDEDEVPAGVDVTKISMPEEDLLNAPGEEYSVTLTEKGTYKFYCAPHAGAGMVGKVTVN 165          
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS2_TOBAC (Plastocyanin B'/B'' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.967e-44
Identity = 84/99 (84.85%), Postives = 92/99 (92.93%), Query Frame = -3
Query:  174 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTVN 470
            IEVLLG DDG LAFVP +FSVS+GEKI FKNNAGFPHNVVFDEDEIP+GVD SKISMS EDLLNGPGETY+VTL+EKGTY+ YC+PHQGAGMVG+VTVN
Sbjct:    1 IEVLLGSDDGGLAFVPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAGVDASKISMSEEDLLNGPGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN 99          
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS_PEA (Plastocyanin, chloroplastic OS=Pisum sativum GN=PETE PE=4 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.356e-44
Identity = 90/135 (66.67%), Postives = 98/135 (72.59%), Query Frame = -3
Query:  174 SASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTVN 578
            S S  P+L ++A+LKD G                 A+EVLLG  DG LAFVPSS  VS+GE IVFKNNAGFPHNVVFDEDEIP+GVD SKISM  EDLLN PGETY+V L  KGTY  YCSPHQGAGMVGQVTVN
Sbjct:   34 STSQSPRLCVRASLKDFGVALVATAASAVLASNALAVEVLLGASDGGLAFVPSSLEVSAGETIVFKNNAGFPHNVVFDEDEIPAGVDASKISMPEEDLLNAPGETYSVKLDAKGTYKFYCSPHQGAGMVGQVTVN 168          
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS_RUMOB (Plastocyanin OS=Rumex obtusifolius GN=PETE PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.724e-44
Identity = 82/98 (83.67%), Postives = 92/98 (93.88%), Query Frame = -3
Query:  177 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTV 470
            IE+ LGGDDG+LAFVP SF+V++GEKIVFKNNAGFPHN+VFDEDE+P+GVD SKISMS EDLLN PGETYAVTL+EKGTYS YCSPHQGAGMVG+VTV
Sbjct:    1 IEIKLGGDDGALAFVPGSFTVAAGEKIVFKNNAGFPHNIVFDEDEVPAGVDASKISMSEEDLLNAPGETYAVTLSEKGTYSFYCSPHQGAGMVGKVTV 98          
BLAST of CF835114 vs. ExPASy Swiss-Prot
Match: PLAS1_TOBAC (Plastocyanin A'/A'' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 7.476e-44
Identity = 83/99 (83.84%), Postives = 92/99 (92.93%), Query Frame = -3
Query:  174 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSLYCSPHQGAGMVGQVTVN 470
            IEVLLG DDG LAFVP +FSVS+GEKI FKNNAGFPHNVVFDEDEIP+GVDVSKISMS E+ LNGPGETY+VTL+EKGTY+ YC+PHQGAGMVG+VTVN
Sbjct:    1 IEVLLGSDDGGLAFVPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAGVDVSKISMSEEEYLNGPGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN 99          
The following BLAST results are available for this feature:
BLAST of CF835114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
PLAS_SOLLC4.525e-4967.38Plastocyanin, chloroplastic OS=Solanum lycopersicu... [more]
PLAS_SPIOL7.719e-4971.11Plastocyanin, chloroplastic OS=Spinacia oleracea G... [more]
PLAS1_POPNI6.534e-4867.61Plastocyanin A, chloroplastic OS=Populus nigra GN=... [more]
PLAS2_POPNI1.609e-4665.49Plastocyanin B, chloroplastic OS=Populus nigra GN=... [more]
PLAS2_ARATH6.116e-4663.51Plastocyanin major isoform, chloroplastic OS=Arabi... [more]
PLAS_SILPR3.035e-4567.16Plastocyanin, chloroplastic OS=Silene pratensis GN... [more]
PLAS2_TOBAC1.967e-4484.85Plastocyanin B'/B'' OS=Nicotiana tabacum PE=1 SV=1[more]
PLAS_PEA3.356e-4466.67Plastocyanin, chloroplastic OS=Pisum sativum GN=PE... [more]
PLAS_RUMOB5.724e-4483.67Plastocyanin OS=Rumex obtusifolius GN=PETE PE=1 SV... [more]
PLAS1_TOBAC7.476e-4483.84Plastocyanin A'/A'' OS=Nicotiana tabacum PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835114 ID=CF835114; Name=CF835114; organism=Citrus sinensis; type=EST; length=607bp
TTTTTTTTTTTTTTTTTAATGGAAAATACAGAGGTTTATTGGNTCCCCCT
TATAAGTCCCACCACATAACATTCTCTCTCACCAAATGCCCTTATGTATG
ATACTCATAAAATGCAAAAAGAAGAGAACGATAACCAATGAGATGAGGCA
AACAAAGTCTGAATGTGAACTTAATTAACAGTCACTTGTCCAACCATGCC
AGCTCCTTGGTGAGGGGAACAGTACAAAGAGTAAGTGCCTTTTTCAGTCA
GAGTAACAGCATAAGTCTCTCCAGGACCATTGAGAAGGTCTTCTGTAGAC
ATGGAGATTTTTGAAACATCAACACCACTCGGAATCTCATCTTCATCGAA
AACAACGTTGTGTGGGAACCCAGCATTGTTCTTGAACACAATCTTTTCAC
CGGAGCTGACAGAGAAAGAGCTTGGAACAAAAGCCAAGGACCCATCATCA
CCACCAAGCAAAACCTCAATGGCCATGGCATTGCTAGCAAGCATTGCGCT
GGCAGCTGTGGCCGCAACGGCCACTCCAACATCTTTGAGTGTGGCCTTGA
TGCTGAGCTTTGGGACAGCAGAGGCTGAGGCCTTCATGGTGGAACCAACA
ACTCTGG
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