CF835124

Overview
NameCF835124
Unique NameCF835124
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length327
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig906 contig Csv1_Contig906:756..1082. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835124 vs. ExPASy Swiss-Prot
Match: 6PGL4_ORYSJ (Probable 6-phosphogluconolactonase 4, chloroplastic OS=Oryza sativa subsp. japonica GN=Os09g0529100 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.389e-19
Identity = 49/69 (71.01%), Postives = 57/69 (82.61%), Query Frame = -2
Query:  126 PPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQ-NSDLLPVQMALAEE-EFTWFLDKDATSKL 326
            PPERITFTFPVINSSAY+AMVV GAGK+ AVQ AL + Q +SDLLPV+MA+ ++ EFTWF DK A S L
Sbjct:  253 PPERITFTFPVINSSAYVAMVVTGAGKAGAVQKALSDKQTSSDLLPVEMAVLQDGEFTWFTDKPAVSML 321          
BLAST of CF835124 vs. ExPASy Swiss-Prot
Match: 6PGL4_ORYSI (Probable 6-phosphogluconolactonase 4, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_031067 PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.389e-19
Identity = 49/69 (71.01%), Postives = 57/69 (82.61%), Query Frame = -2
Query:  126 PPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQ-NSDLLPVQMALAEE-EFTWFLDKDATSKL 326
            PPERITFTFPVINSSAY+AMVV GAGK+ AVQ AL + Q +SDLLPV+MA+ ++ EFTWF DK A S L
Sbjct:  253 PPERITFTFPVINSSAYVAMVVTGAGKAGAVQKALSDKQTSSDLLPVEMAVLQDGEFTWFTDKPAVSML 321          
BLAST of CF835124 vs. ExPASy Swiss-Prot
Match: 6PGL5_ARATH (Probable 6-phosphogluconolactonase 5, chloroplastic OS=Arabidopsis thaliana GN=EMB2024 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.615e-15
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = -2
Query:  126 PPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAEEEFTWFLDKDATSKL 326
            P ERITFTFPVINSSA++A+VVCG+GK+ AV+ AL   +  ++ P     AE+E  WFLDK A+SKL
Sbjct:  261 PSERITFTFPVINSSAHVALVVCGSGKAEAVEAAL--KKTGNVPPAGSVSAEDELVWFLDKPASSKL 325          
BLAST of CF835124 vs. ExPASy Swiss-Prot
Match: 6PGL3_ORYSJ (Probable 6-phosphogluconolactonase 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0547100 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.615e-15
Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = -2
Query:  126 PPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQ-NSDLLPVQMALAEE-EFTWFLDKDATSKL 326
            PPERITFTFP++NSSA+IA+VV GAGK+ AV  A  + Q +SDLLPV+M   +E   TWF DK A S L
Sbjct:  256 PPERITFTFPLVNSSAHIALVVTGAGKAGAVHKAFSDKQSSSDLLPVEMVSQQEGVLTWFTDKPAVSML 324          
BLAST of CF835124 vs. ExPASy Swiss-Prot
Match: 6PGL3_ORYSI (Probable 6-phosphogluconolactonase 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_30141 PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 6.615e-15
Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = -2
Query:  126 PPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQ-NSDLLPVQMALAEE-EFTWFLDKDATSKL 326
            PPERITFTFP++NSSA+IA+VV GAGK+ AV  A  + Q +SDLLPV+M   +E   TWF DK A S L
Sbjct:  256 PPERITFTFPLVNSSAHIALVVTGAGKAGAVHKAFSDKQSSSDLLPVEMVSQQEGVLTWFTDKPAVSML 324          
The following BLAST results are available for this feature:
BLAST of CF835124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
6PGL4_ORYSJ3.389e-1971.01Probable 6-phosphogluconolactonase 4, chloroplasti... [more]
6PGL4_ORYSI3.389e-1971.01Probable 6-phosphogluconolactonase 4, chloroplasti... [more]
6PGL5_ARATH6.615e-1558.21Probable 6-phosphogluconolactonase 5, chloroplasti... [more]
6PGL3_ORYSJ6.615e-1560.87Probable 6-phosphogluconolactonase 3, chloroplasti... [more]
6PGL3_ORYSI6.615e-1560.87Probable 6-phosphogluconolactonase 3, chloroplasti... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06L11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835124 ID=CF835124; Name=CF835124; organism=Citrus sinensis; type=EST; length=327bp
AAGTTCACTCCTGTTCTCATTACTACCCCAATCCAGCAGTACTAGTAGTC
AAACCACACAGATCAAACCAATTATCATAGCAGATAACAGGGATTCATGC
ATACAGCAAATTGTTCTGACTCTTACAGCTTTGAAGTCGCGTCTTTGTCA
AGAAACCAAGTGAATTCTTCTTCAGCCAATGCCATTTGAACTGGCAGCAA
ATCAGAGTTTTGATTATTACCCAATGCAGTTTGAACTGCACTTGATTTTC
CAGCACCACACACCACCATTGCAATATATGCAGATGAGTTGATTACAGGG
AAGGTGAAAGTGATTCTCTCTGGAGGT
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