CF835126

Overview
NameCF835126
Unique NameCF835126
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835126_ssr268 microsatellite CF835126_ssr268:268..285. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5287 contig Csv1_Contig5287:16..632. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835126 vs. ExPASy Swiss-Prot
Match: EXLB1_ARATH (Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 3.836e-27
Identity = 53/88 (60.23%), Postives = 67/88 (76.14%), Query Frame = -1
Query:  344 PHYVAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDIFSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESEIQL 607
            PHY+AI +LYV G ND+LAVE+WQED +EW  MRR FGAV D+ +PP G ++LRF V GSAG+ W+ + NAIP+DW AG  Y+S I L
Sbjct:  162 PHYLAILVLYVGGVNDILAVEVWQEDCKEWRRMRRVFGAVHDLQNPPRGTLTLRFLVYGSAGINWIQSPNAIPADWTAGATYDSNILL 249          
BLAST of CF835126 vs. ExPASy Swiss-Prot
Match: EXPB1_ORYSJ (Expansin-B1 OS=Oryza sativa subsp. japonica GN=EXPB1a PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 34/91 (37.36%), Postives = 56/91 (61.54%), Query Frame = -1
Query:  341 PHYVAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDIFSPP--EGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESEIQLK 607
            P+Y+A+ + YVAG  DV+ VEI ++  +EW A++ ++GA++ I +P   +G  S+R    G      ++A +AIP  WKA   Y+S +Q K
Sbjct:  180 PNYLALLVKYVAGDGDVVEVEIKEKGSEEWKALKESWGAIWRIDTPKPLKGPFSVRVTTEGGEK---IIAEDAIPDGWKADSVYKSNVQAK 267          
BLAST of CF835126 vs. ExPASy Swiss-Prot
Match: EXLB1_ORYSJ (Expansin-like B1 OS=Oryza sativa subsp. japonica GN=EXLB1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 33/95 (34.74%), Postives = 52/95 (54.74%), Query Frame = -1
Query:  341 SRYPHYVAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDIFSPPEGAISLRFQVSGSA---GLTWVVANNAIPSDWKAGVAYESEIQLK 616
            S +P+Y+   I Y  G  D++AV++ +        + R  GAV+   SPP G +S+R   S  A   G TW+V  N +P +W AG  Y+S +Q++
Sbjct:  160 SNFPNYLEFEIWYQQGNQDIIAVQLCETVNLTCQLLSRTHGAVWAAVSPPSGPLSIRMLFSSGAPRGGDTWLVPTNIVPQNWTAGATYDSGVQVQ 254          
The following BLAST results are available for this feature:
BLAST of CF835126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
EXLB1_ARATH3.836e-2760.23Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 ... [more]
EXPB1_ORYSJ3.854e-1137.36Expansin-B1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXLB1_ORYSJ5.033e-1134.74Expansin-like B1 OS=Oryza sativa subsp. japonica G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06L12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835126 ID=CF835126; Name=CF835126; organism=Citrus sinensis; type=EST; length=616bp
TTACCTTAAAGAAAGCGGAATCCTTTTAATTTATTCCTTCGTTAATTAAA
TCAAAAGATCTCCTTTAAGTACACCATCCCACTATTTATTTAGCAACTAG
TTAAGTATTAAGGAGGCAGGGGTACACAATACATGCCAAGCAACACACTA
AAAAAAAAAAAAAGATAAAGTAACAGCCCTTGCTGATGCTGGGCAACAAA
ATACTAAAATATCTAAACGACATTAAGAAGCTGATAACCAGGAACCAGTA
ATGGAAAAGTTGTTCCCATATATATATATATATATTCTTCTATTCCATGA
TATGGCATATAATAATAAAGCTTGGGATATCCCAAATTTATTTAAGCTGA
ATTTCTGACTCATAAGCAACGCCAGCCTTCCAATCGCTAGGAATAGCATT
GTTTGCCACAACCCATGTGAGCCCCGCGCTGCCACTCACTTGAAACCTCA
AACTAATTGCTCCTTCTGGGGGACTAAAGATGTCAAATACTGCACCGAAA
GCCCTTCTCATTGCCACCCATTCTTGATAATCCTCCTGCCATATTTCAAC
TGCTAGGACATCATTTTGGCCAGCTACGTACAAAATGGCTATGGCCACGT
AATGGGGGTACCTGCT
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