CF835127

Overview
NameCF835127
Unique NameCF835127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5287 contig Csv1_Contig5287:380..1104. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXLB1_ARATH (Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 PE=2 SV=2)

HSP 1 Score: 285.034 bits (728), Expect = 2.716e-76
Identity = 134/230 (58.26%), Postives = 163/230 (70.87%), Query Frame = 2
Query:   32 LSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVS-RLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            + V++LLP LC S      SRATYYGSPD    P G CG+GE+GR +N+  V+GVS RLW NGTGCGACYQVRCK+P  C                 TDFILSP+AYGRMA P    +LYS+GVVNVE++R+PC Y GYNL +K+HE S  PHYLAI +LYV G ND+LAVE+WQED +EW  MRR FGAV D+ +PP G ++LRF V GSAG+ W+ + NAIP+DW AG
Sbjct:   12 VQVIVLLPLLCLSD-DFVNSRATYYGSPDCKANPRGHCGYGEFGRDINNGEVSGVSWRLWNNGTGCGACYQVRCKIPPHCSEEGVYVVATDSGEGDGTDFILSPKAYGRMARPGTENQLYSFGVVNVEYQRIPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEVWQEDCKEWRRMRRVFGAVHDLQNPPRGTLTLRFLVYGSAGINWIQSPNAIPADWTAG 240          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXLB1_ORYSJ (Expansin-like B1 OS=Oryza sativa subsp. japonica GN=EXLB1 PE=2 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.408e-40
Identity = 91/234 (38.89%), Postives = 128/234 (54.70%), Query Frame = 2
Query:   29 LLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTDFILSPRAYGRMALP-DKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSA---GLTWVVANNAIPSDWKAG 718
            +LS++L L +   +    T SRA YY + D  GT  GAC +G +G T+N+ +V+  + L+++G GCGACYQVRC  P  C                 TDFILS  A+ RMA   D    L + GVV +E+RRV C Y   N+ FK+ E+S +P+YL   I Y  G  D++AV++ +        + R  GAV+   SPP G +S+R   S  A   G TW+V  N +P +W AG
Sbjct:   12 ILSLILFL-SKATADANFTVSRAAYYPNSDIKGTENGACEYGAFGATLNNGDVSASASLYRDGVGCGACYQVRCTNPYYCSPNGVTIVITDSGASDGTDFILSQHAFTRMAQSTDAGTALLTLGVVGIEYRRVSCTYPNKNIVFKITESSNFPNYLEFEIWYQQGNQDIIAVQLCETVNLTCQLLSRTHGAVWAAVSPPSGPLSIRMLFSSGAPRGGDTWLVPTNIVPQNWTAG 244          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXLA2_ARATH (Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.508e-34
Identity = 84/235 (35.74%), Postives = 128/235 (54.47%), Query Frame = 2
Query:   26 YLLSVMLLLPALCYSHYTSTYS-RATYYGSPDSLGTPTGACGFGEYGRTVNDANVAG-VSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPDKSAE--LYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            +LLSV+LL  +   +     +S +A Y+ S  +L +  GAC +G         ++A  +  ++K+G+GCGAC+QVRCK P LC                +TD +LS RA+  MA P   A+  L   G+V++E+RRVPC Y    +  +V E+S+ P+YLAI +LY  GQ +V+A+ I Q     W  M R+ GAV+     P GA+  RF V+       V +   +P++W+AG
Sbjct:    7 FLLSVVLLFSSSAAACDRCLHSSKAAYFSSASALSS--GACAYGSMATGFFAGHIAAALPSIYKDGSGCGACFQVRCKNPTLCSSKGTTVIVTDLNKTNQTDLVLSSRAFRAMAKPVVGADRDLLKQGIVDIEYRRVPCDYGNKKMNVRVEESSKNPNYLAIKLLYQGGQTEVVAIYIAQVGSSHWSYMTRSHGAVWVTDKVPNGALQFRFVVTAGYDGKMVWSQRVLPANWEAG 239          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXLA3_ARATH (Expansin-like A3 OS=Arabidopsis thaliana GN=EXLA3 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.774e-34
Identity = 76/213 (35.68%), Postives = 118/213 (55.40%), Query Frame = 2
Query:   89 SRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAG-VSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPDKSAELY--SYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            S+A+Y+ S  +L +  GAC +G    +    ++A  +  ++K+G GCGAC+QVRCK P+LC                +TD +LS RA+  MA P    + Y    G+V+VE++RVPC Y   NL  +V E S+ P+YLAI +LY  GQ +V+ ++I      +W  M R+ GAV+     P GA+  +F V+G      V +   +P++W +G
Sbjct:   28 SKASYFSSASALSS--GACAYGPMATSFFAGHIAAAIPSIYKDGAGCGACFQVRCKNPKLCNSKGTIVMVTDLNTSNQTDLVLSSRAFRAMAKPVVGVDKYLLKQGIVDVEYQRVPCNYGKRNLNVRVEEASKKPNYLAIKLLYQGGQTEVVGIDIAPVGSSQWSYMSRSHGAVWATDKVPTGALQFKFTVTGGYDGKTVWSKRVLPANWNSG 238          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXLA1_ARATH (Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.276e-33
Identity = 78/214 (36.45%), Postives = 120/214 (56.07%), Query Frame = 2
Query:   89 SRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAG-VSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPDKSAE--LYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQ-EDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            S+A Y+ S  +L +  GAC +G    +    ++A  +  ++K+G GCGAC+QVRCK P+LC                +TD +LS RA+  MA P   A+  L   G+V++E++RVPC Y   N+  +V E S+ P+YL I +LY  GQ +V++++I Q      W  M R+ GAV+     P GAI  RF V+G      + + + +PS+W+AG
Sbjct:   28 SKAAYFSSASALSS--GACAYGSMATSFFAGHIAAAIPSIYKDGAGCGACFQVRCKNPKLCSTKGTIVMITDLNKSNQTDLVLSSRAFRAMAKPIVGADKDLLKQGIVDIEYQRVPCDYGNKNMNVRVEEASKKPNYLEIKLLYQGGQTEVVSIDIAQVGSSPNWGYMTRSHGAVWVTDKVPTGAIQFRFVVTGGYDGKMIWSQSVLPSNWEAG 239          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXLA1_ORYSJ (Expansin-like A1 OS=Oryza sativa subsp. japonica GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.274e-33
Identity = 79/213 (37.09%), Postives = 110/213 (51.64%), Query Frame = 2
Query:   89 SRATYYGSPDSLGTPTGACGFGEYGRTVNDAN--VAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVAN-NAIPSDWKAG 718
            SRA YY S  SL    G+CG+G    T N      A    L++ G GCGACYQVRCK  +LC                +T  +LS  A+  MA P  +A L     V+VE++RVPC Y+  +L  +V E SR P+ L I+ LY  GQ D++AV++ Q     W  M R  G  + +++ P G + +R  V+G     WV A+   +P  W+AG
Sbjct:   43 SRAAYYTS--SLTLTAGSCGYGTAAATFNGGGFLAAAGPALYRGGVGCGACYQVRCKDKKLCSNAGARVVVTDRARTNRTGLVLSSPAFAAMARPGMAASLTELAAVDVEYKRVPCEYRHRSLSVRVDERSRGPNELTISFLYQGGQTDIVAVDVAQVGSSSWKFMTREHGPSWSMANAPPGPLQMRLVVTGGYDGKWVWADREVLPRRWRAG 253          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXLA2_ORYSJ (Expansin-like A2 OS=Oryza sativa subsp. japonica GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.562e-30
Identity = 74/204 (36.27%), Postives = 105/204 (51.47%), Query Frame = 2
Query:  119 SLGTPTGACGFGEYGRTVNDANVAGVS-RLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXX-KTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYK-GYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVAN-NAIPSDWKAG 718
            S+    G+CG+G    + N  ++A  S  L++ G GCGAC+QVRCK  +LC                 +TD +LS  AY  MA P  +A+L +   V+VE++RVPC Y  G NL  +V E SR P  L+I  LY  GQ D++AV++       W  M R +G  +  +  P G +  R  V+G     WV A+   +P  W AG
Sbjct:   46 SIALNAGSCGYGSLAASFNGGHLAAASPALFRGGVGCGACFQVRCKDGKLCSTAGAKVVVTDEARSTNRTDLVLSAAAYAAMARPGMAAQLRTRRAVDVEYKRVPCEYAAGRNLSIRVEEKSRPPRELSIRFLYQGGQTDIVAVDVATVGSSNWKFMTRDYGPAWSTAQAPAGPLQFRVVVTGGYDGKWVWADGEVLPRRWTAG 249          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXLA3_ORYSJ (Expansin-like A3 OS=Oryza sativa subsp. japonica GN=EXLA3 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.367e-27
Identity = 66/198 (33.33%), Postives = 98/198 (49.49%), Query Frame = 2
Query:  137 GACGFGEYGRTVNDAN---VAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVAN-NAIPSDWKAG 718
            G CG+G     +        AG  R  + G GCG C+Q+RC+  ++C                 TDF+L   A+  +A P  + +L     ++VE+RR+PC YK  NL   V E S+ P+ L I  LY  GQ D+LAV++ Q    +W  M R +G V+ I   P G +  R  V+G     WV A+   +P++W+ G
Sbjct:   53 GGCGYGAMAMEMELNGGFLAAGGPRQHRGGLGCGRCFQMRCRNAEVCSNAGVRVVLTDFHRSNSTDFLLGGPAFAGLAKPGMAHKLKKLDALSVEYRRIPCDYKDKNLSILVEEQSKRPNNLVIKFLYQGGQTDILAVDVAQVGSSDWRFMTRVYGPVWSIDRAPNGPLQFRAVVTGGYDGKWVWADREVLPANWQPG 250          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPB1_ORYSJ (Expansin-B1 OS=Oryza sativa subsp. japonica GN=EXPB1a PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.511e-26
Identity = 71/217 (32.72%), Postives = 114/217 (52.53%), Query Frame = 2
Query:   89 SRATYYGSPDSLGTPT--GACGFGEYGRT-VNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKT--DFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVH-ENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPP--EGAISLRFQVSGSAGLTWVVANNAIPSDWKA 715
            ++AT+YG+P   G     GACG+ +  +      N  G   ++K+G GCG+C++++C  P+ C                     F LS  A+G MA   K  EL   G+++ +FRRV C Y   + +   H E +  P+YLA+ + YVAG  DV+ VEI ++  +EW A++ ++GA++ I +P   +G  S+R    G      ++A +AIP  WKA
Sbjct:   44 AKATWYGAPKGAGPKDNGGACGYKDVDKAPFLGMNSCGNDPIFKDGKGCGSCFEIKCSKPEACSDKPALIHVTDMNDEPIAAYHFDLSGLAFGAMAKDGKDEELRKAGIIDTQFRRVKCKYPA-DTKITFHIEKASNPNYLALLVKYVAGDGDVVEVEIKEKGSEEWKALKESWGAIWRIDTPKPLKGPFSVRVTTEGGEK---IIAEDAIPDGWKA 256          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXB10_ORYSJ (Expansin-B10 OS=Oryza sativa subsp. japonica GN=EXPB10 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.397e-26
Identity = 72/217 (33.18%), Postives = 110/217 (50.69%), Query Frame = 2
Query:   89 SRATYYGSPDSLGTPT--GACGFGEYGRT-VNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKT--DFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYN-LQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPP--EGAISLRFQVSGSAGLTWVVANNAIPSDWKA 715
            +R T+YG P   G     GACG+ +  +      N  G   ++K+G GCG+C++V+C  P+ C                     F LS  A+G MA   K  EL   G+++++FRRV C Y G   + F V + S  P+Y A+ + YV G  DV+ VE+ ++  +EW  +  ++GA++ I +P   +G  SLR        L   VAN+ IP +WKA
Sbjct:   44 ARGTWYGKPKGAGPDDNGGACGYKDIDKAPFLGMNSCGNDPIFKDGKGCGSCFEVKCSKPEACSDKPVIIHITDMNTEPIAAYHFDLSGHAFGAMAKEGKDEELRKAGIIDMQFRRVRCKYPGETKVTFHVEKGSN-PNYFAVLVKYVGGDGDVVKVELKEKGSEEWKPLNESWGAIWRIDTPKPLKGPFSLRVTTESDQKL---VANDVIPDNWKA 256          
The following BLAST results are available for this feature:
BLAST of CF835127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
EXLB1_ARATH2.716e-7658.26Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 ... [more]
EXLB1_ORYSJ1.408e-4038.89Expansin-like B1 OS=Oryza sativa subsp. japonica G... [more]
EXLA2_ARATH1.508e-3435.74Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 ... [more]
EXLA3_ARATH9.774e-3435.68Expansin-like A3 OS=Arabidopsis thaliana GN=EXLA3 ... [more]
EXLA1_ARATH1.276e-3336.45Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 ... [more]
EXLA1_ORYSJ8.274e-3337.09Expansin-like A1 OS=Oryza sativa subsp. japonica G... [more]
EXLA2_ORYSJ8.562e-3036.27Expansin-like A2 OS=Oryza sativa subsp. japonica G... [more]
EXLA3_ORYSJ1.367e-2733.33Expansin-like A3 OS=Oryza sativa subsp. japonica G... [more]
EXPB1_ORYSJ1.511e-2632.72Expansin-B1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB10_ORYSJ4.397e-2633.18Expansin-B10 OS=Oryza sativa subsp. japonica GN=EX... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06L12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835127 ID=CF835127; Name=CF835127; organism=Citrus sinensis; type=EST; length=725bp
TTTGCAAATGGCGTTATATCAATACTACCTTCTTTCCGTCATGCTGCTTT
TGCCTGCATTGTGTTACTCTCATTACACATCCACATATTCTAGAGCTACA
TACTATGGTAGCCCTGATAGTTTAGGGACACCAACTGGTGCTTGCGGGTT
TGGTGAATATGGAAGAACTGTAAATGATGCTAACGTGGCCGGTGTGTCGA
GGCTTTGGAAAAATGGAACTGGTTGTGGAGCTTGCTATCAAGTCAGGTGC
AAGGTACCACAACTTTGCACAGATTATGGGGTGTACGTGGTGGTGACTGA
CTACGGTGAAGGAGACAAAACAGACTTCATCCTCAGCCCGCGCGCATATG
GAAGAATGGCACTTCCAGATAAGTCAGCAGAGCTCTATTCTTATGGTGTG
GTCAACGTTGAATTCCGGAGAGTCCCTTGCTGGTACAAAGGCTACAACCT
TCAGTTCAAGGTCCATGAAAACAGCAGGTACCCACATTACTTGGCCATAG
CCATTCTGTACGTAGCTGGCCAAAATGATGTCCTAGCAGTTGAAATATGG
CAGGAGGATTATCAAGAATGGGTGGCAATGAGAAGGGCTTTCGGTGCAGT
ATTTGACATCTCTAGTCCACCAGAAGGAGCAATTAGTTTGAGGTTTCAAG
TGAGTGGCAGCGCGGGGCTCACATGGGTTGTGGCAAACAATGCTATTCCT
AGCGATTGGAAAGCTGGCGTTGCTT
back to top