CF835151 | Citrus Genome Database

Overview


Name	CF835151
Unique Name	CF835151
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	491

Libraries


Library Name	Type
Ruby Orange Ovary at Anthesis cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig8429	contig	Csv1_Contig8429:1429..1919.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: RAN1B_LOTJA (GTP-binding nuclear protein Ran1B (Fragment) OS=Lotus japonicus GN=RAN1B PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.226e-21
Identity = 51/68 (75.00%), Postives = 52/68 (76.47%), Query Frame = -1

Query:  288 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 491
            AKSNYNFEKPFLYLARKLAGDPNL FVE PALAPPEVQID              ASQPLPDDDDDAF+
Sbjct:  142 AKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFD 209

[Close]

BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: RAN1A_LOTJA (GTP-binding nuclear protein Ran1A (Fragment) OS=Lotus japonicus GN=RAN1A PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.226e-21
Identity = 51/68 (75.00%), Postives = 52/68 (76.47%), Query Frame = -1

Query:  288 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 491
            AKSNYNFEKPFLYLARKLAGDPNL FVE PALAPPEVQID              ASQPLPDDDDDAF+
Sbjct:  142 AKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAQAASQPLPDDDDDAFD 209

[Close]

BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: RAN_VICFA (GTP-binding nuclear protein Ran/TC4 OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.731e-20
Identity = 50/68 (73.53%), Postives = 51/68 (75.00%), Query Frame = -1

Query:  288 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 491
            AKSNYNFEKPFLYLARKLAGD NL FVE PALAPPEVQID              A+QPLPDDDDDAFE
Sbjct:  154 AKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDIALQQRHENEILEAANQPLPDDDDDAFE 221

[Close]

BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: RANA1_TOBAC (GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.731e-20
Identity = 49/68 (72.06%), Postives = 51/68 (75.00%), Query Frame = -1

Query:  288 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 491
            AKSNYNFEKPFLYLARKLAGDPNL FVE PALAPPEVQID              ASQPLPDDDD+ F+
Sbjct:  154 AKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDETFD 221

[Close]

BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: RAN3_ARATH (GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 3.566e-20
Identity = 50/68 (73.53%), Postives = 50/68 (73.53%), Query Frame = -1

Query:  288 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 491
            AKSNYNFEKPFLYLARKLAGD NL FVE PALAPPEVQID              ASQPLPDDDDD FE
Sbjct:  154 AKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 221

[Close]

BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: RAN2_SOLLC (GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum GN=RAN2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.038e-19
Identity = 48/68 (70.59%), Postives = 50/68 (73.53%), Query Frame = -1

Query:  288 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 491
            AKSNYNFEKPFLYLARKLAGD NL FVE PALAPPEVQID               +QPLPDDDD+AFE
Sbjct:  154 AKSNYNFEKPFLYLARKLAGDGNLHFVESPALAPPEVQIDLAAQALHEQELQAALNQPLPDDDDEAFE 221

[Close]

BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: RAN2_ARATH (GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 1.770e-19
Identity = 48/68 (70.59%), Postives = 50/68 (73.53%), Query Frame = -1

Query:  288 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 491
            AKSNYNFEKPFLYLARKLAGD NL FVE PALAPPEV +D              A+QPLPDDDDDAFE
Sbjct:  154 AKSNYNFEKPFLYLARKLAGDQNLHFVESPALAPPEVHLDIAAQQQNEADLAAAAAQPLPDDDDDAFE 221

[Close]

BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: RAN1_SOLLC (GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum GN=RAN1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.943e-19
Identity = 48/68 (70.59%), Postives = 50/68 (73.53%), Query Frame = -1

Query:  288 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 491
            AKSNYNFEKPFLYLARKLAGD NL FVE PALAPPEV ID              A+QPLPDDDD+AFE
Sbjct:  154 AKSNYNFEKPFLYLARKLAGDGNLHFVESPALAPPEVHIDLAAQALHEEELQQAANQPLPDDDDEAFE 221

[Close]

BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: RAN1_ARATH (GTP-binding nuclear protein Ran-1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.943e-19
Identity = 48/68 (70.59%), Postives = 49/68 (72.06%), Query Frame = -1

Query:  288 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 491
            AKSNYNFEKPFLYLARKLAGD NL FVE PALAPPEV ID              A+QPLPDDDDD FE
Sbjct:  154 AKSNYNFEKPFLYLARKLAGDQNLHFVETPALAPPEVHIDIADQQKNEAELLQAAAQPLPDDDDDIFE 221

[Close]

BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: RANB1_TOBAC (GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.556e-18
Identity = 47/68 (69.12%), Postives = 49/68 (72.06%), Query Frame = -1

Query:  288 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 491
            AKSNYNFEKPFLYLARKLAGD NL FVE PALAPPEVQID              A+  LPDDDD+AFE
Sbjct:  154 AKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDLAAQQLHEQELLQAAAHALPDDDDEAFE 221

The following BLAST results are available for this feature:

BLAST of CF835151 vs. ExPASy Swiss-Prot

BLAST of CF835151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43


Match Name	E-value	Identity	Description
RAN1B_LOTJA	3.226e-21	75.00	GTP-binding nuclear protein Ran1B (Fragment) OS=Lo...	[more]
RAN1A_LOTJA	3.226e-21	75.00	GTP-binding nuclear protein Ran1A (Fragment) OS=Lo...	[more]
RAN_VICFA	2.731e-20	73.53	GTP-binding nuclear protein Ran/TC4 OS=Vicia faba ...	[more]
RANA1_TOBAC	2.731e-20	72.06	GTP-binding nuclear protein Ran-A1 OS=Nicotiana ta...	[more]
RAN3_ARATH	3.566e-20	73.53	GTP-binding nuclear protein Ran-3 OS=Arabidopsis t...	[more]
RAN2_SOLLC	1.038e-19	70.59	GTP-binding nuclear protein Ran2 OS=Solanum lycope...	[more]
RAN2_ARATH	1.770e-19	70.59	GTP-binding nuclear protein Ran-2 OS=Arabidopsis t...	[more]
RAN1_SOLLC	3.943e-19	70.59	GTP-binding nuclear protein Ran1 OS=Solanum lycope...	[more]
RAN1_ARATH	3.943e-19	70.59	GTP-binding nuclear protein Ran-1 OS=Arabidopsis t...	[more]
RANB1_TOBAC	2.556e-18	69.12	GTP-binding nuclear protein Ran-B1 OS=Nicotiana ta...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS02_06M05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M05, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF835151 ID=CF835151; Name=CF835151; organism=Citrus sinensis; type=EST; length=491bp
GAACCTCCTTTTGTTATGCATAAAAGGATTGGAATGGCATAATCCACGAA
CCTGAAACATCATTCCAGTAATAAGAAAACTCGCAAAAAAAAACAAGTAT
AAAAAGAGTCTCCAACGGGTATCTAAAGGTACAACCTATCTACTATAATC
CATTGTTCTCGATGGGCACGCCTACGCTGATAACCAAATCTCCGCCATGT
GTTGAAAATTTCCAAAATAACAGCATTTTTAAGTCAAGCAGCAGCATGAG
AGGTTGCGCCTACACCCGTCCAAGCAGATCCTCTCTACTCAAATGCATCA
TCATCGTCATCAGGAAGAGGCTGGCTAGCTGCTGCGGCAAGCTCGGCTTC
ATGTTGTTGCTGTGCAGCTAAGTCAATCTGGACTTCTGGAGGAGCGAGAG
CAGGACATTCCACGAAGGGCAAATTTGGGTCCCCAGCAAGCTTCCTGGCA
AGGTACAAGAAAGGTTTCTCAAAATTGTAGTTGCTCTTGGC