CF835159

Overview
NameCF835159
Unique NameCF835159
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7759 contig Csv1_Contig7759:307..1055. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835159 vs. ExPASy Swiss-Prot
Match: EF1D2_ARATH (Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.457e-43
Identity = 100/189 (52.91%), Postives = 111/189 (58.73%), Query Frame = -1
Query:  202 SKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXSAPVATXXXXXXXXXXXXXXXXXXD------LFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 750
            SK P+SE+VNVSRW+ HIDALLRI              S+P+                    +      LFG                             SVL+D+KPWDDETDMKKLEEAVRS+QMEGL WGASKL PVGYGIKKL IM TIVDDLVS+DT+IEE L  EPINEYVQSCDIVAFNKI
Sbjct:   43 SKPPTSEFVNVSRWFNHIDALLRISGVSAEGSGVIVEGSSPITEEAVATPPAADSKDTAAEEEDDDDVDLFGEETEEEKKAAEERAASVKASTKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSIQMEGLFWGASKLVPVGYGIKKLHIMCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231          
BLAST of CF835159 vs. ExPASy Swiss-Prot
Match: EF1D1_ARATH (Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.457e-43
Identity = 99/189 (52.38%), Postives = 111/189 (58.73%), Query Frame = -1
Query:  202 SKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXSAPVATXXXXXXXXXXXXXXXXXXD------LFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 750
            +K P+S+YVN SRWY HIDALLRI              SAP+                    +      LFG                             SVL+D+KPWDDETDMKKLEEAV+S+QMEGL WGASKL PVGYGIKKLQI+ TIVDDLVS+DT+IEE L  EPINEYVQSCDIVAFNKI
Sbjct:   43 AKPPTSQYVNASRWYNHIDALLRISGVSAEGSGVIVEGSAPITEEAVATPPAADSKDAAADEEDDDDVDLFGEETEEEKKAAEERAASVKASTKKKESGKSSVLIDIKPWDDETDMKKLEEAVKSIQMEGLFWGASKLVPVGYGIKKLQILCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231          
BLAST of CF835159 vs. ExPASy Swiss-Prot
Match: EF1D_PIMBR (Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 2.104e-42
Identity = 97/183 (53.01%), Postives = 109/183 (59.56%), Query Frame = -1
Query:  202 SKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXSAPVATXXXXXXXXXXXXXXXXXXDLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 750
            +K PSS+YVNVSRWY H++ALLRI              S+                      DLFG                             SVLLDVKPWDDETDM KLEEAVRS++M+GLLWGASKL  VGYGIKKLQIMLTIVDDLVSVD L+E++L  EP NEY+QSCDIVAFNKI
Sbjct:   44 AKPPSSKYVNVSRWYNHVEALLRISGVSAEGCGVTVEGSSVATPPVADTKASAAEDDDDDDVDLFGEETEEEKKASEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRSIKMDGLLWGASKLVAVGYGIKKLQIMLTIVDDLVSVDDLVEDYLTAEPANEYIQSCDIVAFNKI 226          
BLAST of CF835159 vs. ExPASy Swiss-Prot
Match: EF1D1_ORYSJ (Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 3.968e-41
Identity = 99/186 (53.23%), Postives = 111/186 (59.68%), Query Frame = -1
Query:  202 SKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXSA-PVATXXXXXXXXXXXXXXXXXXD--LFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 750
            S APSS Y NV+RW+ HIDALLR+              +A P A+                  D  LFG                             SVLLDVKPWDDETDM KLEEAVR+V+MEGLLWGASKL PVGYGIKKLQIM+TIVDDLVSVD+LIE++   EP NEY+QSCDIVAFNKI
Sbjct:   44 STAPSSSYTNVARWFTHIDALLRLSGVTADGQGVKVESTAVPSASTPDVADAKAPAADDDDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDIVAFNKI 229          
BLAST of CF835159 vs. ExPASy Swiss-Prot
Match: EF1D2_ORYSJ (Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 1.155e-40
Identity = 94/181 (51.93%), Postives = 107/181 (59.12%), Query Frame = -1
Query:  202 APSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXSAPVATXXXXXXXXXXXXXXXXXXDLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 744
            AP++ YVNV+RWY HI ALLR               +A   +                  DLFG                             SVLLDVKPWDDETDM KLEEAVR+V+MEGLLWGASKL PVGYGIKKLQIM+TIVDDLVSVD+LIE++   EP NE++QSCDIVAFNKI
Sbjct:   46 APAASYVNVTRWYDHISALLRSSGVTAEGEGVKVESTACSVSPTADQKAPAADEEDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDIVAFNKI 226          
BLAST of CF835159 vs. ExPASy Swiss-Prot
Match: EF1B_ORYSJ (Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 1.508e-40
Identity = 82/87 (94.25%), Postives = 84/87 (96.55%), Query Frame = -1
Query:  202 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 462
            VLLDVKPWDDETDMKKLEEAVRSVQMEGL WGASKL PVGYGIKKLQIMLTIVDDLVSVD+LIEEHL EEPINE+VQSCDIVAFNKI
Sbjct:  138 VLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIVAFNKI 224          
BLAST of CF835159 vs. ExPASy Swiss-Prot
Match: EF1D_BETVU (Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 2.572e-40
Identity = 104/187 (55.61%), Postives = 109/187 (58.29%), Query Frame = -1
Query:  202 KAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXSAP---VATXXXXXXXXXXXXXXXXXXD-LFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS-VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 747
            KA  + YVNVSRWYKHIDALLRI              +AP   VAT                    LFG                             S VLLDVKPWDDETDMKKLEEAVRSVQ EGL  GASKL PVGYGIKKL IM+TIVDDLVSVD LIE++L  EPINEYVQSCDIVAFNKI
Sbjct:   45 KASLASYVNVSRWYKHIDALLRISGVSGEGSGVTVEGNAPASDVATPPAADSKASAADDDDDDDVDLFGEETEEEKKAAEERAAAAAAKPAKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQQEGLTLGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDYLTVEPINEYVQSCDIVAFNKI 231          
BLAST of CF835159 vs. ExPASy Swiss-Prot
Match: EF1B1_ARATH (Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 8.562e-36
Identity = 74/87 (85.06%), Postives = 78/87 (89.66%), Query Frame = -1
Query:  202 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 462
            VLL+VKPWDDETDMKKLEEAVRSVQM GL WGASKL PVGYGIKKL IM+TIVDDLVSVD LIE+HL  EP NEY+QS DIVAFNKI
Sbjct:  142 VLLEVKPWDDETDMKKLEEAVRSVQMPGLTWGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDHLTSEPNNEYIQSVDIVAFNKI 228          
BLAST of CF835159 vs. ExPASy Swiss-Prot
Match: EF1B_WHEAT (Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 5.550e-35
Identity = 75/87 (86.21%), Postives = 78/87 (89.66%), Query Frame = -1
Query:  202 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 462
            VL+D+KPWDDETDMKKLEEAVRSVQMEGL WGASKL PVGYGIKKLQIMLTI+DDL S  T IEE L E PINEYVQSCDIVAFNKI
Sbjct:  132 VLMDIKPWDDETDMKKLEEAVRSVQMEGLTWGASKLMPVGYGIKKLQIMLTIIDDLAS--TPIEEVLCEAPINEYVQSCDIVAFNKI 216          
BLAST of CF835159 vs. ExPASy Swiss-Prot
Match: EF1B2_ARATH (Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.615e-34
Identity = 71/87 (81.61%), Postives = 75/87 (86.21%), Query Frame = -1
Query:  202 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 462
            VL+DVKPWDDETDMKKLEEAVR V+M GL WGASKL PVGYGIKKL IM TIVDDLVS D LIE+ L  EP NEY+QSCDIVAFNKI
Sbjct:  138 VLMDVKPWDDETDMKKLEEAVRGVEMPGLFWGASKLVPVGYGIKKLTIMFTIVDDLVSPDNLIEDFLTSEPNNEYIQSCDIVAFNKI 224          
The following BLAST results are available for this feature:
BLAST of CF835159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF1D2_ARATH1.457e-4352.91Elongation factor 1-delta 2 OS=Arabidopsis thalian... [more]
EF1D1_ARATH1.457e-4352.38Elongation factor 1-delta 1 OS=Arabidopsis thalian... [more]
EF1D_PIMBR2.104e-4253.01Elongation factor 1-delta OS=Pimpinella brachycarp... [more]
EF1D1_ORYSJ3.968e-4153.23Elongation factor 1-delta 1 OS=Oryza sativa subsp.... [more]
EF1D2_ORYSJ1.155e-4051.93Elongation factor 1-delta 2 OS=Oryza sativa subsp.... [more]
EF1B_ORYSJ1.508e-4094.25Elongation factor 1-beta OS=Oryza sativa subsp. ja... [more]
EF1D_BETVU2.572e-4055.61Elongation factor 1-delta OS=Beta vulgaris PE=2 SV... [more]
EF1B1_ARATH8.562e-3685.06Elongation factor 1-beta 1 OS=Arabidopsis thaliana... [more]
EF1B_WHEAT5.550e-3586.21Elongation factor 1-beta OS=Triticum aestivum PE=1... [more]
EF1B2_ARATH1.615e-3481.61Elongation factor 1-beta 2 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835159 ID=CF835159; Name=CF835159; organism=Citrus sinensis; type=EST; length=750bp
TTTTTTTTTTTTTTTTCGCCACAGTAAAAAAACTCCAAAGAGAGAGCCTC
TTTAGAAGAACAAATCCATAATGGAACACACAAGACTCCTGAAACAAAAA
TAAATATTTTAAAATAAATATCACTTTGCTATGATCATTATCCAAGACAA
AATCCCCGGAAGCCTCTCTAGCACCCACTTTGCCAAAGGATCCACAAATT
ATATTTTGTTGAAGGCTACAATATCACAGCTCTGGACATATTCATTAATT
GGTTCTTCCAGCAGGTGTTCCTCAATGAGGGTGTCAACAGACACCAAGTC
ATCCACAATTGTAAGCATTATTTGCAATTTCTTGATACCATATCCAACAG
GTGCAAGTTTGCTGGCTCCCCAGAGTAATCCTTCCATCTGAACACTTCTT
ACTGCTTCCTCAAGCTTCTTCATGTCAGTCTCATCATCCCAAGGCTTCAC
ATCCAATAGAACTGATGACTTGCCAGATTCTTTCTTTTTGGCTGATGCTT
TGACGGAAGCTGCGCGTGCCTCGGCAGCCTTCTTTTCCTCTTCTGTCTCC
TCACCAAATAGATCCACATCATCGTCGTCATCATCAGGAGCTGCTGCCTT
TGAGTCAGCTACCGGGGGAGTAGCAACAGGAGCAGATCCCTCTACAGTGA
CACCAGAGCCTTCACCAGTAACGCCAGAGATCCTTAAAAGTGCATCAATA
TGCTTGTACCACCGAGACACATTGACATATTCAGATGATGGTGCTTTTGA
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