CF835172

Overview
NameCF835172
Unique NameCF835172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835172_ssr38 microsatellite CF835172_ssr38:38..49. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10215 contig Csv1_Contig10215:321..1112. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835172 vs. ExPASy Swiss-Prot
Match: MYBJ_DICDI (Myb-like protein J OS=Dictyostelium discoideum GN=mybJ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.233e-12
Identity = 37/68 (54.41%), Postives = 50/68 (73.53%), Query Frame = 1
Query:   61 WTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKYFNRQLTGGKDKRRSSIHDITTVNL 264
            WT+EEH +FL G++  GKG W+ I++ FV TRTPTQ+ SHAQKY+ RQ    K+KR  SIHD++  +L
Sbjct:  379 WTKEEHIRFLNGIQIHGKGAWKEIAQ-FVGTRTPTQIQSHAQKYYLRQKQETKNKR--SIHDLSLQDL 443          
The following BLAST results are available for this feature:
BLAST of CF835172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MYBJ_DICDI3.233e-1254.41Myb-like protein J OS=Dictyostelium discoideum GN=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06M18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835172 ID=CF835172; Name=CF835172; organism=Citrus sinensis; type=EST; length=792bp
CCCGGGCNGCAGGCTCATCGACTCCGCTCTTCTGATCAAGAAAGAAAGAA
AGGAGTTCCTTGGACTGAAGAAGAACACAGGCAATTTCTAATGGGTCTTA
AAAAGTTTGGTAAAGGGGACTGGAGAAATATCTCCCGCAACTTCGTGACC
ACTAGAACCCCAACTCAGGTGGCAAGTCATGCTCAGAAGTACTTCAATAG
GCAGCTTACTGGGGGAAAGGATAAGAGGAGATCTAGCATCCATGATATTA
CAACTGTTAACCTGGATGAAACTGCAACTTCTTCATCAGAAAATAATAAA
CCTCCATCTCCCAGTCCTTCTGCTGCAGTCATCCAGCTGCAGCAGCAACC
AAAAACGGTAGGCATGAGTAATGAGCAATTTAACTGGAAATCACAAAACG
AGGGAACAGCCATGCTTTTCAACTCAATGAATGGCACTGCATTCATGGCT
CCTTTTTGTGGAATTTCTTCATATGGACCTAAGCTGCAGGAACAAAATCT
GCTTGGAGGAAATCTAAATGGATCTCAGTTTGGAGCTTACAGTGCCTATT
TTCAGATGCAATCCATGCAACACCAGTGAACGTACATAATGGGGGAAATG
CTGAAGGTATTTATATGACGCATCTTAGTCAGTGATGTCAGGGTACTTCA
TCCATTCAGCATCTTGGTTATATGTGAATATGTTGATGAGGAGTCAAGTG
AGTCCATAGTATCAGACTCTACACTGATCAGTTAGATTGTTCTATCATTT
ATTGGAATTCTGGATCTCTGAACCATTAGAGAAGCTTATTAA
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