CF835177

Overview
NameCF835177
Unique NameCF835177
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6312 contig Csv1_Contig6312:753..1286. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835177 vs. ExPASy Swiss-Prot
Match: RLA02_ARATH (60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 4.286e-39
Identity = 76/92 (82.61%), Postives = 88/92 (95.65%), Query Frame = -1
Query:  259 SYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 534
            SYGLVVQSVY+NGSV+SPEVLDL+ED LVEKFAS +SMVT+LALA+SYPTLAAAPHMF+NAYKN +A+A+ATEY+FPQA+KVKEYL DPSKF
Sbjct:  186 SYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKF 277          
BLAST of CF835177 vs. ExPASy Swiss-Prot
Match: RLA03_ARATH (60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.778e-38
Identity = 74/92 (80.43%), Postives = 88/92 (95.65%), Query Frame = -1
Query:  259 SYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 534
            SYGLVVQSVY+NGSV+SPEVLDL+ED LVEKFAS +SMVT+LALA+SYPTLAAAPHMF+NAYKN +A+A+AT+Y+FPQA+KVKE+L DPSKF
Sbjct:  186 SYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKF 277          
BLAST of CF835177 vs. ExPASy Swiss-Prot
Match: RLA0_SOYBN (60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 8.083e-38
Identity = 76/92 (82.61%), Postives = 87/92 (94.57%), Query Frame = -1
Query:  259 SYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 534
            SYGLVV SVY+NGSV+SPEVLDL+EDDL+ KFA+ VSMVT+L+LAISYPTLAAAPHMFVNAYKNV+AVA+ T+YSFP+ADKVKEYL DPSKF
Sbjct:  187 SYGLVVLSVYDNGSVFSPEVLDLTEDDLIGKFAAGVSMVTSLSLAISYPTLAAAPHMFVNAYKNVLAVAVETDYSFPEADKVKEYLKDPSKF 278          
BLAST of CF835177 vs. ExPASy Swiss-Prot
Match: RLA01_ARATH (60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.379e-37
Identity = 74/92 (80.43%), Postives = 89/92 (96.74%), Query Frame = -1
Query:  259 SYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 534
            SYGLVV+SVY+NGSV++PEVL+L+EDDLVEKFA+ VSM+TAL+LAISYPT+AAAPHMF+NAYKNV+AVALATEYSFPQA+ VKE+L DP+KF
Sbjct:  187 SYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKF 278          
BLAST of CF835177 vs. ExPASy Swiss-Prot
Match: RLA0_ORYSJ (60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 1.685e-35
Identity = 69/92 (75.00%), Postives = 85/92 (92.39%), Query Frame = -1
Query:  259 SYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 534
            SYGLV+ +VY++GSV+SPEVLDL+EDDL+EKFAS VSMV +++LAISYPT+AAAPHMF+N YKNV+AVA+ TEYS+P ADK+KEYL DPSKF
Sbjct:  187 SYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKF 278          
BLAST of CF835177 vs. ExPASy Swiss-Prot
Match: RLA0_MAIZE (60S acidic ribosomal protein P0 OS=Zea mays GN=RP-P0 PE=1 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 2.201e-35
Identity = 70/92 (76.09%), Postives = 83/92 (90.22%), Query Frame = -1
Query:  259 SYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 534
            SYGL V SVYE+GSV+SPEVLDLSE+DL+EKFA+ VSMV +L+LAISYPTLAA PHMF+N YKNV+AVA+ T+YS+P ADK+KEYL DPSKF
Sbjct:  187 SYGLQVTSVYEDGSVFSPEVLDLSEEDLIEKFATGVSMVASLSLAISYPTLAAVPHMFINGYKNVLAVAVETDYSYPHADKIKEYLKDPSKF 278          
BLAST of CF835177 vs. ExPASy Swiss-Prot
Match: RLA0_LUPLU (60S acidic ribosomal protein P0 OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.357e-29
Identity = 64/92 (69.57%), Postives = 75/92 (81.52%), Query Frame = -1
Query:  259 SYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 534
            SYGLVV SVY+NGSV+ PEVLDL+EDDL+EKFA  VS       +   P  +AAPH+F+NAYKNV+AVA+ATEYSFPQAD+VKEYL DPSKF
Sbjct:  187 SYGLVVLSVYDNGSVFKPEVLDLTEDDLLEKFAIGVSQCYFSDTSHFIPNPSAAPHVFINAYKNVLAVAVATEYSFPQADEVKEYLKDPSKF 278          
BLAST of CF835177 vs. ExPASy Swiss-Prot
Match: RLA0_ICTPU (60S acidic ribosomal protein P0 OS=Ictalurus punctatus GN=rplp0 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.419e-27
Identity = 54/92 (58.70%), Postives = 71/92 (77.17%), Query Frame = -1
Query:  259 SYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 534
            SYGL++Q VY+NGSVYSPEVLD++ED L ++F   V  + ++ L I YPTLA+ PH  +N YK V+ VA+ T+YSFP ADKVK +LADPS+F
Sbjct:  184 SYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLEGVRNIASVCLQIGYPTLASIPHSIINGYKRVLRVAVETDYSFPMADKVKAFLADPSRF 275          
BLAST of CF835177 vs. ExPASy Swiss-Prot
Match: RLA0_DANRE (60S acidic ribosomal protein P0 OS=Danio rerio GN=rplp0 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.270e-26
Identity = 52/92 (56.52%), Postives = 70/92 (76.09%), Query Frame = -1
Query:  259 SYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 534
            SYGL++Q VY+NGSVYSPEVLD++ED L ++F   V  + ++ L I YPTLA+ PH  +N YK V+AV + T+Y+FP A+KVK YLADP+ F
Sbjct:  187 SYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLKGVRNIASVCLQIGYPTLASIPHTIINGYKRVLAVTVETDYTFPLAEKVKAYLADPTAF 278          
BLAST of CF835177 vs. ExPASy Swiss-Prot
Match: RLA0_RANSY (60S acidic ribosomal protein P0 OS=Rana sylvatica GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.581e-25
Identity = 52/92 (56.52%), Postives = 70/92 (76.09%), Query Frame = -1
Query:  259 SYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 534
            S+GL++Q VY+NGS+YSPEVLD++ED L  +F   V  + ++ L I YPT+A+ PH  VN YK V+A+A+ T+YSFP ADKVK +LADPS F
Sbjct:  184 SFGLIIQQVYDNGSIYSPEVLDITEDALRARFLEGVRNIASVCLQIGYPTVASVPHSVVNGYKRVLALAVETDYSFPLADKVKAFLADPSAF 275          
The following BLAST results are available for this feature:
BLAST of CF835177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RLA02_ARATH4.286e-3982.6160S acidic ribosomal protein P0-2 OS=Arabidopsis t... [more]
RLA03_ARATH2.778e-3880.4360S acidic ribosomal protein P0-3 OS=Arabidopsis t... [more]
RLA0_SOYBN8.083e-3882.6160S acidic ribosomal protein P0 OS=Glycine max PE=... [more]
RLA01_ARATH1.379e-3780.4360S acidic ribosomal protein P0-1 OS=Arabidopsis t... [more]
RLA0_ORYSJ1.685e-3575.0060S acidic ribosomal protein P0 OS=Oryza sativa su... [more]
RLA0_MAIZE2.201e-3576.0960S acidic ribosomal protein P0 OS=Zea mays GN=RP-... [more]
RLA0_LUPLU2.357e-2969.5760S acidic ribosomal protein P0 OS=Lupinus luteus ... [more]
RLA0_ICTPU6.419e-2758.7060S acidic ribosomal protein P0 OS=Ictalurus punct... [more]
RLA0_DANRE9.270e-2656.5260S acidic ribosomal protein P0 OS=Danio rerio GN=... [more]
RLA0_RANSY1.581e-2556.5260S acidic ribosomal protein P0 OS=Rana sylvatica ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835177 ID=CF835177; Name=CF835177; organism=Citrus sinensis; type=EST; length=534bp
TTTTTTTATTGTCCTAAATAAAGGATTATATAAAATAAAAAGGAAACTGA
GTCCACTAAAAGCATTAAGAAAATAAAGCAAACATAACCATAAACGTCAA
AATCCTAAGTTATAGCACAAATGACAGTGCACTTAGTCGAACAAGATGAA
GCCCATATCTTCATCAGACTCCTCAGCAGGCTCTTCCTTCTTCTCTTCCT
CCAATGCAGCAGCAGCTGGGGCATCACCACCGCCAGCAACCGGGGCAGCA
GCAACAGCAAACTTGCTTGGGTCCGCCAGGTACTCCTTCACTTTGTCGGC
CTGAGGGAATGAATACTCAGTTGCAAGAGCAACAGCAACCACATTCTTGT
ATGCATTGACGAACATGTGTGGAGCAGCTGCCAGGGTCGGGTATGAGATG
GCAAGTGCCAGAGCGGTGACCATTGATACACTTGAGGCGAACTTCTCCAC
TAGGTCATCTTCAGACAGGTCAAGGACCTCTGGGCTGTAGACGGAACCGT
TTTCATAGACAGACTGGACAACAAGACCATAAGA
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