CF835178

Overview
NameCF835178
Unique NameCF835178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length536
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6312 contig Csv1_Contig6312:752..1287. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA02_ARATH (60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 9.548e-39
Identity = 75/92 (81.52%), Postives = 88/92 (95.65%), Query Frame = 2
Query:    2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277
            SYGLVVQSVY+NGSV+SP+VLDL+ED LVEKFAS +SMVT+LALA+SYPTLAAAPHMF+NAYKN +A+A+ATEY+FPQA+KVKEYL DPSKF
Sbjct:  186 SYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKF 277          
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA03_ARATH (60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 6.189e-38
Identity = 73/92 (79.35%), Postives = 88/92 (95.65%), Query Frame = 2
Query:    2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277
            SYGLVVQSVY+NGSV+SP+VLDL+ED LVEKFAS +SMVT+LALA+SYPTLAAAPHMF+NAYKN +A+A+AT+Y+FPQA+KVKE+L DPSKF
Sbjct:  186 SYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKF 277          
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA0_SOYBN (60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.801e-37
Identity = 75/92 (81.52%), Postives = 87/92 (94.57%), Query Frame = 2
Query:    2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277
            SYGLVV SVY+NGSV+SP+VLDL+EDDL+ KFA+ VSMVT+L+LAISYPTLAAAPHMFVNAYKNV+AVA+ T+YSFP+ADKVKEYL DPSKF
Sbjct:  187 SYGLVVLSVYDNGSVFSPEVLDLTEDDLIGKFAAGVSMVTSLSLAISYPTLAAAPHMFVNAYKNVLAVAVETDYSFPEADKVKEYLKDPSKF 278          
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA01_ARATH (60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.072e-37
Identity = 73/92 (79.35%), Postives = 89/92 (96.74%), Query Frame = 2
Query:    2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277
            SYGLVV+SVY+NGSV++P+VL+L+EDDLVEKFA+ VSM+TAL+LAISYPT+AAAPHMF+NAYKNV+AVALATEYSFPQA+ VKE+L DP+KF
Sbjct:  187 SYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKF 278          
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA0_ORYSJ (60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 3.755e-35
Identity = 68/92 (73.91%), Postives = 85/92 (92.39%), Query Frame = 2
Query:    2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277
            SYGLV+ +VY++GSV+SP+VLDL+EDDL+EKFAS VSMV +++LAISYPT+AAAPHMF+N YKNV+AVA+ TEYS+P ADK+KEYL DPSKF
Sbjct:  187 SYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKF 278          
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA0_MAIZE (60S acidic ribosomal protein P0 OS=Zea mays GN=RP-P0 PE=1 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 4.904e-35
Identity = 69/92 (75.00%), Postives = 83/92 (90.22%), Query Frame = 2
Query:    2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277
            SYGL V SVYE+GSV+SP+VLDLSE+DL+EKFA+ VSMV +L+LAISYPTLAA PHMF+N YKNV+AVA+ T+YS+P ADK+KEYL DPSKF
Sbjct:  187 SYGLQVTSVYEDGSVFSPEVLDLSEEDLIEKFATGVSMVASLSLAISYPTLAAVPHMFINGYKNVLAVAVETDYSYPHADKIKEYLKDPSKF 278          
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA0_LUPLU (60S acidic ribosomal protein P0 OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.251e-29
Identity = 63/92 (68.48%), Postives = 75/92 (81.52%), Query Frame = 2
Query:    2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277
            SYGLVV SVY+NGSV+ P+VLDL+EDDL+EKFA  VS       +   P  +AAPH+F+NAYKNV+AVA+ATEYSFPQAD+VKEYL DPSKF
Sbjct:  187 SYGLVVLSVYDNGSVFKPEVLDLTEDDLLEKFAIGVSQCYFSDTSHFIPNPSAAPHVFINAYKNVLAVAVATEYSFPQADEVKEYLKDPSKF 278          
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA0_ICTPU (60S acidic ribosomal protein P0 OS=Ictalurus punctatus GN=rplp0 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.430e-26
Identity = 53/92 (57.61%), Postives = 71/92 (77.17%), Query Frame = 2
Query:    2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277
            SYGL++Q VY+NGSVYSP+VLD++ED L ++F   V  + ++ L I YPTLA+ PH  +N YK V+ VA+ T+YSFP ADKVK +LADPS+F
Sbjct:  184 SYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLEGVRNIASVCLQIGYPTLASIPHSIINGYKRVLRVAVETDYSFPMADKVKAFLADPSRF 275          
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA0_DANRE (60S acidic ribosomal protein P0 OS=Danio rerio GN=rplp0 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.065e-25
Identity = 51/92 (55.43%), Postives = 70/92 (76.09%), Query Frame = 2
Query:    2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277
            SYGL++Q VY+NGSVYSP+VLD++ED L ++F   V  + ++ L I YPTLA+ PH  +N YK V+AV + T+Y+FP A+KVK YLADP+ F
Sbjct:  187 SYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLKGVRNIASVCLQIGYPTLASIPHTIINGYKRVLAVTVETDYTFPLAEKVKAYLADPTAF 278          
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA0_RANSY (60S acidic ribosomal protein P0 OS=Rana sylvatica GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.522e-25
Identity = 51/92 (55.43%), Postives = 70/92 (76.09%), Query Frame = 2
Query:    2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277
            S+GL++Q VY+NGS+YSP+VLD++ED L  +F   V  + ++ L I YPT+A+ PH  VN YK V+A+A+ T+YSFP ADKVK +LADPS F
Sbjct:  184 SFGLIIQQVYDNGSIYSPEVLDITEDALRARFLEGVRNIASVCLQIGYPTVASVPHSVVNGYKRVLALAVETDYSFPLADKVKAFLADPSAF 275          
The following BLAST results are available for this feature:
BLAST of CF835178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RLA02_ARATH9.548e-3981.5260S acidic ribosomal protein P0-2 OS=Arabidopsis t... [more]
RLA03_ARATH6.189e-3879.3560S acidic ribosomal protein P0-3 OS=Arabidopsis t... [more]
RLA0_SOYBN1.801e-3781.5260S acidic ribosomal protein P0 OS=Glycine max PE=... [more]
RLA01_ARATH3.072e-3779.3560S acidic ribosomal protein P0-1 OS=Arabidopsis t... [more]
RLA0_ORYSJ3.755e-3573.9160S acidic ribosomal protein P0 OS=Oryza sativa su... [more]
RLA0_MAIZE4.904e-3575.0060S acidic ribosomal protein P0 OS=Zea mays GN=RP-... [more]
RLA0_LUPLU5.251e-2968.4860S acidic ribosomal protein P0 OS=Lupinus luteus ... [more]
RLA0_ICTPU1.430e-2657.6160S acidic ribosomal protein P0 OS=Ictalurus punct... [more]
RLA0_DANRE2.065e-2555.4360S acidic ribosomal protein P0 OS=Danio rerio GN=... [more]
RLA0_RANSY3.522e-2555.4360S acidic ribosomal protein P0 OS=Rana sylvatica ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835178 ID=CF835178; Name=CF835178; organism=Citrus sinensis; type=EST; length=536bp
CTCTTATGGTCTTGTTGTCCAGTCTGTCTATGAAAACGGTTCCGTCTACA
GCCCACAGGTCCTTGACCTGTCTGAAGATGACCTAGTGGAGAAGTTCGCC
TCAAGTGTATCAATGGTCACCGCTCTGGCACTTGCCATCTCATACCCGAC
CCTGGCAGCTGCTCCACACATGTTCGTCAATGCATACAAGAATGTGGTTG
CTGTTGCTCTTGCAACTGAGTATTCATTCCCTCAGGCCGACAAAGTGAAG
GAGTACCTGGCGGACCCAAGCAAGTTTGCTGTTGCTGCTGCCCCGGTTGC
TGGCGGGGGTGATGCCCCAGCTGCTGCTGCAAAGGAGGAAGAGAACAAGG
AAGAGCCTGCTGAGGAGTCTGATGAAGATATGGGCTTCAGCTTGTTCGAC
TAAGTGCACTGTCATTTGTGCTATAACTTATGATTTTGACGTTTATGGTT
ATGTTTGCTTTATTTTCTTAATGCTTTTTGTAGACTCAGTTTCCTTTTTA
TTTTATATAATCCTTTATTTAGGACAATAAAAAAAA
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