CF835186

Overview
NameCF835186
Unique NameCF835186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835186 vs. ExPASy Swiss-Prot
Match: ERG28_ARATH (Ergosterol biosynthetic protein 28 OS=Arabidopsis thaliana GN=At1g10030 PE=2 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 7.896e-52
Identity = 96/127 (75.59%), Postives = 107/127 (84.25%), Query Frame = -2
Query:  227 MKALGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTTMTEVHGRTFGIWXXXXXXXXXXCAFNLENRPLYWATFLSFIYAFGHFLTEYLIYQTMAIGNLTTVGIFAGTSIIWMLLQWNARQQVHPK 607
            MKALG+WLM+VGSLRLASVWFGFF+IWALRLAVFS TTM+EVHGRTFG+W          CAFNLEN+PLY ATFLSFIYA GHFLTEYL YQTM I NL+TVG FAGTSI+WMLL+WN+ +Q H K
Sbjct:    1 MKALGYWLMVVGSLRLASVWFGFFNIWALRLAVFSQTTMSEVHGRTFGVWTLLTCTLCFLCAFNLENKPLYLATFLSFIYALGHFLTEYLFYQTMTIANLSTVGFFAGTSIVWMLLEWNSLEQPHSK 127          
The following BLAST results are available for this feature:
BLAST of CF835186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ERG28_ARATH7.896e-5275.59Ergosterol biosynthetic protein 28 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06N03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06N03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835186 ID=CF835186; Name=CF835186; organism=Citrus sinensis; type=EST; length=722bp
GGCTGCGGCCCCCCGAGTTTTTTTTTTTTTTTTAAGGGGGAACGGAGTTC
AGATCTTCATCTATTTTTAATCAATACTAACCGGAAAAAGCAATCAGAAA
TTCTTTGTAAGCATCCTCAGCAAAACTTGCTACCAAATTGTACACGTAGA
TTATGACAATCTCTTGTGAAAATTAATCTATTTCACAAACAAAAAGGAGT
CTTTGTATGATCCAATTTCATGAATCCTTGGGGTGAACTTGCTGGCGTGC
ATTCCACTGCAACAGCATCCAAATTATTGATGTACCAGCAAAGATGCCAA
CAGTTGTCAGATTTCCAATGGCCATTGTTTGATAGATTAGGTATTCAGTC
AAGAAATGACCAAAAGCATAGATGAATGACAAAAATGTCGCCCAATACAG
CGGTCTGTTTTCAAGATTAAATGCACAAAGAAAGCAAAGAGTGCAAGTCA
AAAGCGTCCAAATCCCAAATGTCCTTCCATGAACTTCAGTCATGGTAGTG
TTGGAGAAGACAGCAAGTCTGAGAGCCCAAATATCGAAGAAGCCAAACCA
AACGGAGGCTAATCGAAGGGAACCCACCAGCATCAGCCACCATCCCAATG
CCTTCATTTTTCCTTCCCTTTGTTGTGCTGACTGTTGACGCACTCCCCAC
TCTTCTTCTCCCAATCTTTTTTTTTTAAATTCAAAAAGTTTTATTTATTT
TTTCTACAGTTCAATTACTCAC
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