CF835187

Overview
NameCF835187
Unique NameCF835187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835187_ssr579 microsatellite CF835187_ssr579:579..590. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF835187 vs. ExPASy Swiss-Prot
Match: INO1_TOBAC (Inositol-3-phosphate synthase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.781e-40
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = -3
Query:  283 PIVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 531
            PI+LDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK
Sbjct:  428 PIILDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 510          
BLAST of CF835187 vs. ExPASy Swiss-Prot
Match: INO1_SESIN (Inositol-3-phosphate synthase OS=Sesamum indicum PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.781e-40
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = -3
Query:  283 PIVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 531
            PI+LDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK
Sbjct:  428 PIILDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 510          
BLAST of CF835187 vs. ExPASy Swiss-Prot
Match: INO1_NICPA (Inositol-3-phosphate synthase OS=Nicotiana paniculata GN=INPS1 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.781e-40
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = -3
Query:  283 PIVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 531
            PI+LDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK
Sbjct:  428 PIILDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 510          
BLAST of CF835187 vs. ExPASy Swiss-Prot
Match: INO1_CITPA (Inositol-3-phosphate synthase OS=Citrus paradisi PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.781e-40
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = -3
Query:  283 PIVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 531
            PI+LDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK
Sbjct:  425 PIILDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 507          
BLAST of CF835187 vs. ExPASy Swiss-Prot
Match: INO2_ARATH (Inositol-3-phosphate synthase isozyme 2 OS=Arabidopsis thaliana GN=At2g22240 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.373e-39
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = -3
Query:  283 PIVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 531
            PI+LDLVLLAELSTRIQ KAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMI+EYK
Sbjct:  428 PIILDLVLLAELSTRIQFKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMIMEYK 510          
BLAST of CF835187 vs. ExPASy Swiss-Prot
Match: INO1_WHEAT (Inositol-3-phosphate synthase OS=Triticum aestivum GN=MIPS PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.178e-38
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = -3
Query:  283 PIVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 531
            PI+LDLVLLAELSTRIQ KAEGEGKFHSFHPVATILSYLTKAPLVP GTPVVNALSKQRAMLENILRACVGLAPENNMILEYK
Sbjct:  428 PIILDLVLLAELSTRIQFKAEGEGKFHSFHPVATILSYLTKAPLVPAGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 510          
BLAST of CF835187 vs. ExPASy Swiss-Prot
Match: INO1_MAIZE (Inositol-3-phosphate synthase OS=Zea mays PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.178e-38
Identity = 79/83 (95.18%), Postives = 82/83 (98.80%), Query Frame = -3
Query:  283 PIVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 531
            PI+LDLVLLAELSTRIQLKAEGE KFHSFHPVATILSYLTKAPLVPPGTPVVNAL+KQRAMLENI+RACVGLAPENNMILEYK
Sbjct:  428 PIILDLVLLAELSTRIQLKAEGEDKFHSFHPVATILSYLTKAPLVPPGTPVVNALAKQRAMLENIMRACVGLAPENNMILEYK 510          
BLAST of CF835187 vs. ExPASy Swiss-Prot
Match: INO1_ORYSJ (Inositol-3-phosphate synthase OS=Oryza sativa subsp. japonica GN=INO1 PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.538e-38
Identity = 79/83 (95.18%), Postives = 82/83 (98.80%), Query Frame = -3
Query:  283 PIVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 531
            PI+LDLVLLAELSTRIQLKAEGE KFHSFHPVATILSYLTKAPLVPPGTPVVNAL+KQRAMLENI+RACVGLAPENNMILEYK
Sbjct:  428 PIILDLVLLAELSTRIQLKAEGEEKFHSFHPVATILSYLTKAPLVPPGTPVVNALAKQRAMLENIMRACVGLAPENNMILEYK 510          
BLAST of CF835187 vs. ExPASy Swiss-Prot
Match: INO1_SPIPO (Inositol-3-phosphate synthase OS=Spirodela polyrrhiza GN=TUR1 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.009e-38
Identity = 79/83 (95.18%), Postives = 82/83 (98.80%), Query Frame = -3
Query:  283 PIVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 531
            PI+LDLVLLAELSTRIQLKAEGE KFHSFHPVA+ILSYL+KAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK
Sbjct:  428 PIILDLVLLAELSTRIQLKAEGESKFHSFHPVASILSYLSKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 510          
BLAST of CF835187 vs. ExPASy Swiss-Prot
Match: INO1_MESCR (Inositol-3-phosphate synthase OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.623e-38
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = -3
Query:  283 PIVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 531
            PI+LDLVLLAELSTRIQLKAE E KFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK
Sbjct:  430 PIILDLVLLAELSTRIQLKAEEEDKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 512          
The following BLAST results are available for this feature:
BLAST of CF835187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
INO1_TOBAC4.781e-4098.80Inositol-3-phosphate synthase OS=Nicotiana tabacum... [more]
INO1_SESIN4.781e-4098.80Inositol-3-phosphate synthase OS=Sesamum indicum P... [more]
INO1_NICPA4.781e-4098.80Inositol-3-phosphate synthase OS=Nicotiana panicul... [more]
INO1_CITPA4.781e-4098.80Inositol-3-phosphate synthase OS=Citrus paradisi P... [more]
INO2_ARATH2.373e-3996.39Inositol-3-phosphate synthase isozyme 2 OS=Arabido... [more]
INO1_WHEAT1.178e-3896.39Inositol-3-phosphate synthase OS=Triticum aestivum... [more]
INO1_MAIZE1.178e-3895.18Inositol-3-phosphate synthase OS=Zea mays PE=2 SV=... [more]
INO1_ORYSJ1.538e-3895.18Inositol-3-phosphate synthase OS=Oryza sativa subs... [more]
INO1_SPIPO2.009e-3895.18Inositol-3-phosphate synthase OS=Spirodela polyrrh... [more]
INO1_MESCR2.623e-3896.39Inositol-3-phosphate synthase OS=Mesembryanthemum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06N03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06N03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835187 ID=CF835187; Name=CF835187; organism=Citrus sinensis; type=EST; length=680bp
TTTTTTTTTTCCCGCAATACAGTTATTTATGAACTTCCATATATTATCTA
CTTGCAATACAAGAGATTTCATGCTCCGAAATGAGCTACAAAGGCAATGG
GCTACACTCCAGCACCTTCATTAAAAAAATAAAAGAGCAAACATACAGGA
CACACTAATATTAACCACAATTTCATGACACAAGACATTACAATCAGTAA
TTAAATGGACCACCACAGCTTTGATTGGTGACAGAGAAAGGGAAAACCGG
TTCTTCCACTTTTCTCCCCTGCAAGTTCTTCACTTGTATTCCAAAATCAT
GTTGTTCTCAGGAGCCAAGCCAACGCAAGCCCTCAGAATGTTCTCAAGCA
TTGCACGCTGCTTCGACAGCGCATTCACCACTGGTGTGCCTGGAGGGACC
AGAGGAGCCTTGGTGAGGTAGCTGAGAATTGTAGCCACAGGGTGGAAAGA
GTGGAATTTGCCCTCTCCTTCAGCTTTGAGCTGGATCCTGGTGCTGAGTT
CAGCCAGCAGAACCAAATCTAGAACGATTGGAGCAGCCAAAAGGAAGGAA
GAGGAAGCTAAGAAAGAAGAGCCAAAGAAAGAAGAAGAAGCTAAGAAAGA
AGAGCCCAAAAAAGAAGAACCCAAGAAAGAAGAAGAAAAGAAAGAGGAAG
AGAAAAAGAAAGAAGCGGCACCGGCACCGG
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