CF835192

Overview
NameCF835192
Unique NameCF835192
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig983 contig Csv1_Contig983:449..1124. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835192 vs. ExPASy Swiss-Prot
Match: FBL23_ARATH (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.058e-31
Identity = 74/122 (60.66%), Postives = 85/122 (69.67%), Query Frame = -1
Query:  326 CSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIES-----DDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGAD 676
            C  S E+L  +G  CP L++ KLN    R P+I       DD+AKAIAE+M  LRHLQL GN LTN GL AILDGCPHLE LDLRQCFN+NLVG L K C ERI+DLR PNDS  D + G+D
Sbjct:  313 CLFSGESLRDIGRSCPNLKTLKLN----RAPEIMFSNSGFDDNAKAIAESMPELRHLQLLGNGLTNKGLNAILDGCPHLEHLDLRQCFNINLVGDLKKRCFERIKDLRCPNDSDDDSDDGSD 430          

HSP 2 Score: 108.227 bits (269), Expect = 4.030e-23
Identity = 56/94 (59.57%), Postives = 67/94 (71.28%), Query Frame = -1
Query:  290 DDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDY 571
            DD+  AIAE M  LRHL+LFGN LTN+ L+AILD C HL  LDLR+CFN+NL+G L K C+ERIRDLR P+DST D  F A   D   +  +DY
Sbjct:   19 DDEPLAIAETMPELRHLKLFGNGLTNLRLEAILDNCVHLVHLDLRRCFNINLLGDLEKRCSERIRDLRRPDDSTADSPFDAS-SDIYSAGEDDY 111          
BLAST of CF835192 vs. ExPASy Swiss-Prot
Match: FB221_ARATH (Putative F-box protein At4g05480 OS=Arabidopsis thaliana GN=At4g05480 PE=4 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.382e-31
Identity = 73/141 (51.77%), Postives = 90/141 (63.83%), Query Frame = -1
Query:  266 LEAVGSLCPLLRSFKLNNRGHRC----------PKIESDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLES-LDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIE 655
            L+A+G  CP L++ KLN+ G             P +E DDDA AIAE+M  LRHLQL GN LTN GL AILDGCPHLE  LD+R+CFN+NLVG L K C +RI++LR P+DST DY FG    DF  +  +    G  + E
Sbjct:  175 LKAIGHACPQLKTLKLNSLGSELAHDISQVGYIPLLECDDDALAIAESMPKLRHLQLMGNGLTNTGLNAILDGCPHLEEHLDVRKCFNINLVGNLEKRCMKRIKELRRPHDSTADYPFGQASPDFAMNLEDKVTFGRQESE 315          
BLAST of CF835192 vs. ExPASy Swiss-Prot
Match: SKI19_ARATH (F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.606e-30
Identity = 72/139 (51.80%), Postives = 90/139 (64.75%), Query Frame = -1
Query:  260 CSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIESDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELV 676
            CS S E+L  VG  C  +++ KLN      P+ E+DDDA AIAE M  LRHLQL GN L++ GL AILD C +LE LDLR+CFNVNLVG L K C E ++ +RHPNDS HD + G        SS ++ P   SDI+L+
Sbjct:  150 CSFSVESLRVVGQCCLNMKTLKLNKH----PQKENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVNLVGDLQKRCFESVKVVRHPNDSIHDIDIG--------SSEDEDPYDFSDIDLM 276          
BLAST of CF835192 vs. ExPASy Swiss-Prot
Match: FBL22_ARATH (Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana GN=FBL22 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.903e-30
Identity = 70/142 (49.30%), Postives = 85/142 (59.86%), Query Frame = -1
Query:  266 CSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIESDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEF-----GADFQDFCWSSVEDYPSGISDIE 676
            CS+ +E  + +G  CP L++ KL   G      ESD+DA AIA+ M GL HLQL  N LTN+GL AILDGCPHLE LDLRQCFN+NL G L + C ERI+D R PND   DY +         +D      E+Y  G  D E
Sbjct:  159 CSIEEEHFKTIGQACPNLKTLKLV--GFWSHLNESDNDALAIADTMPGLLHLQLISNGLTNIGLNAILDGCPHLECLDLRQCFNINLFGDLERQCLERIKDFRCPNDVLDDYNYVIFSDNGSIEDEKGEEEENYSYGSDDTE 298          
BLAST of CF835192 vs. ExPASy Swiss-Prot
Match: FBL21_ARATH (Putative F-box/LRR-repeat protein 21 OS=Arabidopsis thaliana GN=FBL21 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.269e-28
Identity = 63/121 (52.07%), Postives = 77/121 (63.64%), Query Frame = -1
Query:  335 LEAVGSLCPLLRSFKLNNRGHRCPK--------------IESDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEF 655
            L+A+G  CP L++ KLN+ G   P               +E DDDA AIAE+M  L HLQL  N LTN GL AILDGCPHLE LD+R+CF ++LVG L K C E I++LR P DST DY +
Sbjct:  181 LKAIGHACPQLKTLKLNSLGRLWPASDKYDSNVLDDMGPLECDDDALAIAESMPKLHHLQLMANRLTNTGLNAILDGCPHLEHLDVRKCFRISLVGNLEKRCLEMIKELRRPGDSTADYPY 301          
BLAST of CF835192 vs. ExPASy Swiss-Prot
Match: FBL9_ARATH (Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana GN=FBL9 PE=4 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.989e-18
Identity = 49/93 (52.69%), Postives = 62/93 (66.67%), Query Frame = -1
Query:  398 SLSQEALEAVGSLCPLLRSFKLNNRGH-RCPKIESDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLESLDLRQCFNVNLVGKLGK 673
            S+ ++ L+ VG  CP LR+ KLN  G  +C     D  A AIAE M GLRHLQLF N L+  GL AIL+GCPHL++L L QC N+N+VG + K
Sbjct:  158 SIREQELKVVGQSCPNLRTLKLNCTGDVKC----CDKVALAIAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLGLHQCLNINIVGDIVK 246          
The following BLAST results are available for this feature:
BLAST of CF835192 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
FBL23_ARATH1.058e-3160.66Putative F-box/LRR-repeat protein 23 OS=Arabidopsi... [more]
FB221_ARATH1.382e-3151.77Putative F-box protein At4g05480 OS=Arabidopsis th... [more]
SKI19_ARATH2.606e-3051.80F-box protein SKIP19 OS=Arabidopsis thaliana GN=SK... [more]
FBL22_ARATH9.903e-3049.30Putative F-box/LRR-repeat protein 22 OS=Arabidopsi... [more]
FBL21_ARATH9.269e-2852.07Putative F-box/LRR-repeat protein 21 OS=Arabidopsi... [more]
FBL9_ARATH2.989e-1852.69Putative F-box/LRR-repeat protein 9 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06N06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06N06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835192 ID=CF835192; Name=CF835192; organism=Citrus sinensis; type=EST; length=676bp
TTTTTTTTTTTTTTTTTAAGCAAGAGTCTTCAGTCTCATGTTTGACACAC
AAGGTAGAAAGTGATAATAAAGTCATAACACAAACCAAGGAAATATCAGC
GAATGACCATAGACAAACCAAGGGAGATGACATAAGTACTAACATCTCAA
CTCTCTCTTATTCTACCAAACTTGACCCCTAATCATTAAACAAATAGTCA
TAGTCAAAGTCATAGCCAAAGTCATAATCAGAGAACTCATAGTAATCATC
TTCATCAGACACAAGCTCAATATCGGAAATACCAGATGGGTAATCTTCTA
CAGATGACCAACAAAAATCTTGAAAATCTGCACCGAATTCATAGTCATGG
GTAGAGTCATTGGGATGTCGTAAATCTCTGATTCTCTCAGCACATATCTT
CCCCAATTTCCCAACCAGATTGACATTGAAACACTGGCGCAGGTCAAGTG
ATTCAAGGTGAGGACAGCCATCAAGAATAGCCTGCAACCCCACATTTGTC
AGCTCGTTTCCAAATAACTGGAGATGGCGCAATCCATGCATGTTTTCTGC
TATAGCTTTCGCATCATCATCACTCTCTATTTTTGGGCACCTGTGACCCC
GGTTGTTCAATTTAAATGATCTCAGAAGTGGGCAAAGGCTCCCAACAGCT
TCCAATGCTTCTTGTGATAATGAGCA
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