CF835196

Overview
NameCF835196
Unique NameCF835196
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2998 contig Csv1_Contig2998:703..1059. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_DICDI (Ribosome biogenesis protein NSA2 homolog OS=Dictyostelium discoideum GN=nsa2 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.596e-37
Identity = 72/112 (64.29%), Postives = 93/112 (83.04%), Query Frame = -3
Query:    2 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTISKKKKK 337
            MPQGD+IELH+KR G RLDH+E+ RKK AR  HKRS IAQK  G+K K++ KKRY+EKA MKKT+AMH+E ++++  DD+V+EGAVPAYLLDRE  +RAKVLSN + +K+K+
Sbjct:    1 MPQGDHIELHQKRFGRRLDHYEKVRKKTARAAHKRSAIAQKVTGLKAKLYNKKRYSEKAEMKKTIAMHQERTNKKASDDKVKEGAVPAYLLDREGVSRAKVLSNMVKQKRKE 112          
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_HUMAN (Ribosome biogenesis protein NSA2 homolog OS=Homo sapiens GN=TINP1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.793e-35
Identity = 67/112 (59.82%), Postives = 93/112 (83.04%), Query Frame = -3
Query:    2 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTISKKKKK 337
            MPQ +YIELHRKR GYRLD+ E+KRKKE+RE H+RS+ A+K +G+K K++ K+R+AEK  MKKT+ MHE+ ++++K D++  +GAVPAYLLDRE  +RAKVLSN I +K+K+
Sbjct:    1 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKE 112          
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_RAT (Ribosome biogenesis protein NSA2 homolog OS=Rattus norvegicus GN=Tinp1 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 1.279e-34
Identity = 67/112 (59.82%), Postives = 92/112 (82.14%), Query Frame = -3
Query:    2 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTISKKKKK 337
            MPQ +YIELHRKR GYRLD+ E+KRKKE RE H+RS+ A+K +G+K K++ K+R+AEK  MKKT+ MHE+ ++++K D++  +GAVPAYLLDRE  +RAKVLSN I +K+K+
Sbjct:    1 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKE 112          
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_MOUSE (Ribosome biogenesis protein NSA2 homolog OS=Mus musculus GN=Tinp1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.279e-34
Identity = 67/112 (59.82%), Postives = 92/112 (82.14%), Query Frame = -3
Query:    2 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTISKKKKK 337
            MPQ +YIELHRKR GYRLD+ E+KRKKE RE H+RS+ A+K +G+K K++ K+R+AEK  MKKT+ MHE+ ++++K D++  +GAVPAYLLDRE  +RAKVLSN I +K+K+
Sbjct:    1 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKE 112          
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_BOVIN (Ribosome biogenesis protein NSA2 homolog OS=Bos taurus GN=TINP1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.279e-34
Identity = 67/112 (59.82%), Postives = 92/112 (82.14%), Query Frame = -3
Query:    2 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTISKKKKK 337
            MPQ +YIELHRKR GYRLD+ E+KRKKE RE H+RS+ A+K +G+K K++ K+R+AEK  MKKT+ MHE+ ++++K D++  +GAVPAYLLDRE  +RAKVLSN I +K+K+
Sbjct:    1 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKE 112          
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_CANGA (Ribosome biogenesis protein NSA2 OS=Candida glabrata GN=NSA2 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.373e-27
Identity = 62/111 (55.86%), Postives = 78/111 (70.27%), Query Frame = -3
Query:    8 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEG-AVPAYLLDRENTTRAKVLSNTISKKK 337
            MPQ DYIE H K++G RLD+ ERKRK+EAREVHK +E AQK  G KGK FAKKRYAEK  M+K +  HE+S ++         G A+P YLLDRE T  AK +S++I +K+
Sbjct:    1 MPQNDYIERHIKQHGRRLDYEERKRKREAREVHKVAEKAQKLTGWKGKQFAKKRYAEKVAMRKKIKAHEQSKAKGSSKPLADNGEALPTYLLDREQTNTAKAISSSIKQKR 111          
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_ASHGO (Ribosome biogenesis protein NSA2 OS=Ashbya gossypii GN=NSA2 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.515e-27
Identity = 62/111 (55.86%), Postives = 76/111 (68.47%), Query Frame = -3
Query:    8 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEG-AVPAYLLDRENTTRAKVLSNTISKKK 337
            MPQ +YIE H K++G RLDH ERKRK+EARE HK SE AQK  G KGK FAKKRYAEK  M+K +  HE+S  +         G A+PAYLLDRE    AK +S++I +K+
Sbjct:    1 MPQNEYIEQHIKKHGRRLDHEERKRKREAREAHKISEKAQKLTGWKGKQFAKKRYAEKVAMRKKIKAHEQSKLKGAAKPLEDSGEALPAYLLDREQANSAKAISSSIKQKR 111          
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_KLULA (Ribosome biogenesis protein NSA2 OS=Kluyveromyces lactis GN=NSA2 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.282e-26
Identity = 65/112 (58.04%), Postives = 78/112 (69.64%), Query Frame = -3
Query:    8 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSR--RKVDDEVQEGAVPAYLLDRENTTRAKVLSNTISKKK 337
            MPQ +YIE H K++G RLDH ERKRK+EARE HK SE AQK  G KGK FAKKRYAEK  MKK +  HE+S  +   K  DE  E A+P YLLDRE    AK +S++I +K+
Sbjct:    1 MPQNEYIEQHIKQHGRRLDHDERKRKREAREAHKISEKAQKLTGWKGKQFAKKRYAEKVAMKKKIRAHEQSKVKGGSKPLDENGE-ALPTYLLDREQNNTAKAISSSIKQKR 111          
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_YEAST (Ribosome biogenesis protein NSA2 OS=Saccharomyces cerevisiae GN=NSA2 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.856e-26
Identity = 62/111 (55.86%), Postives = 76/111 (68.47%), Query Frame = -3
Query:    8 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEG-AVPAYLLDRENTTRAKVLSNTISKKK 337
            MPQ DYIE H K++G RLDH ERKRK+EARE HK SE AQK  G KGK FAKKRYAEK  M+K +  HE+S  +        +G A+P YLLDRE    AK +S++I +K+
Sbjct:    1 MPQNDYIERHIKQHGKRLDHEERKRKREARESHKISERAQKLTGWKGKQFAKKRYAEKVSMRKKIKAHEQSKVKGSSKPLDTDGDALPTYLLDREQNNTAKAISSSIKQKR 111          
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_YEAS7 (Ribosome biogenesis protein NSA2 OS=Saccharomyces cerevisiae (strain YJM789) GN=NSA2 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.856e-26
Identity = 62/111 (55.86%), Postives = 76/111 (68.47%), Query Frame = -3
Query:    8 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEG-AVPAYLLDRENTTRAKVLSNTISKKK 337
            MPQ DYIE H K++G RLDH ERKRK+EARE HK SE AQK  G KGK FAKKRYAEK  M+K +  HE+S  +        +G A+P YLLDRE    AK +S++I +K+
Sbjct:    1 MPQNDYIERHIKQHGKRLDHEERKRKREARESHKISERAQKLTGWKGKQFAKKRYAEKVSMRKKIKAHEQSKVKGSSKPLDTDGDALPTYLLDREQNNTAKAISSSIKQKR 111          
The following BLAST results are available for this feature:
BLAST of CF835196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
NSA2_DICDI3.596e-3764.29Ribosome biogenesis protein NSA2 homolog OS=Dictyo... [more]
NSA2_HUMAN9.793e-3559.82Ribosome biogenesis protein NSA2 homolog OS=Homo s... [more]
NSA2_RAT1.279e-3459.82Ribosome biogenesis protein NSA2 homolog OS=Rattus... [more]
NSA2_MOUSE1.279e-3459.82Ribosome biogenesis protein NSA2 homolog OS=Mus mu... [more]
NSA2_BOVIN1.279e-3459.82Ribosome biogenesis protein NSA2 homolog OS=Bos ta... [more]
NSA2_CANGA3.373e-2755.86Ribosome biogenesis protein NSA2 OS=Candida glabra... [more]
NSA2_ASHGO7.515e-2755.86Ribosome biogenesis protein NSA2 OS=Ashbya gossypi... [more]
NSA2_KLULA1.282e-2658.04Ribosome biogenesis protein NSA2 OS=Kluyveromyces ... [more]
NSA2_YEAST2.856e-2655.86Ribosome biogenesis protein NSA2 OS=Saccharomyces ... [more]
NSA2_YEAS72.856e-2655.86Ribosome biogenesis protein NSA2 OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06N08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835196 ID=CF835196; Name=CF835196; organism=Citrus sinensis; type=EST; length=357bp
TTTTTTTTTTTTTTTTGCTTATAGTGTTGCTAAGCACCTTCGCTCTTGTT
GTGTTTTCACGATCAAGCAAATAAGCAGGAACAGCACCCTCTTGAACTTC
ATCATCCACCTTTCTACGACTTGATGACTCTTCATGCATAGCCAAAGTTT
TCTTCATGAGAGCCTTCTCAGCATAGCGTTTTTTAGCAAACATCTTGCCC
TTAATACCCAAAGCCTTTTGGGCAATTTCGGAGCGCTTATGGACTTCACG
CGCCTCCTTCTTGCGCTTGCGCTCGAAGTGATCGAGACGGTAGCCATTTC
GCTTCCTGTGAAGCTCTATGTAATCTCCTTGCGGCATTTCGTAAGGGCTT
TGAAGCC
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