CF835196
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_DICDI (Ribosome biogenesis protein NSA2 homolog OS=Dictyostelium discoideum GN=nsa2 PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 3.596e-37 Identity = 72/112 (64.29%), Postives = 93/112 (83.04%), Query Frame = -3 Query: 2 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTISKKKKK 337 MPQGD+IELH+KR G RLDH+E+ RKK AR HKRS IAQK G+K K++ KKRY+EKA MKKT+AMH+E ++++ DD+V+EGAVPAYLLDRE +RAKVLSN + +K+K+ Sbjct: 1 MPQGDHIELHQKRFGRRLDHYEKVRKKTARAAHKRSAIAQKVTGLKAKLYNKKRYSEKAEMKKTIAMHQERTNKKASDDKVKEGAVPAYLLDREGVSRAKVLSNMVKQKRKE 112
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_HUMAN (Ribosome biogenesis protein NSA2 homolog OS=Homo sapiens GN=TINP1 PE=1 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 9.793e-35 Identity = 67/112 (59.82%), Postives = 93/112 (83.04%), Query Frame = -3 Query: 2 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTISKKKKK 337 MPQ +YIELHRKR GYRLD+ E+KRKKE+RE H+RS+ A+K +G+K K++ K+R+AEK MKKT+ MHE+ ++++K D++ +GAVPAYLLDRE +RAKVLSN I +K+K+ Sbjct: 1 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKE 112
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_RAT (Ribosome biogenesis protein NSA2 homolog OS=Rattus norvegicus GN=Tinp1 PE=2 SV=2) HSP 1 Score: 144.821 bits (364), Expect = 1.279e-34 Identity = 67/112 (59.82%), Postives = 92/112 (82.14%), Query Frame = -3 Query: 2 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTISKKKKK 337 MPQ +YIELHRKR GYRLD+ E+KRKKE RE H+RS+ A+K +G+K K++ K+R+AEK MKKT+ MHE+ ++++K D++ +GAVPAYLLDRE +RAKVLSN I +K+K+ Sbjct: 1 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKE 112
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_MOUSE (Ribosome biogenesis protein NSA2 homolog OS=Mus musculus GN=Tinp1 PE=2 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 1.279e-34 Identity = 67/112 (59.82%), Postives = 92/112 (82.14%), Query Frame = -3 Query: 2 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTISKKKKK 337 MPQ +YIELHRKR GYRLD+ E+KRKKE RE H+RS+ A+K +G+K K++ K+R+AEK MKKT+ MHE+ ++++K D++ +GAVPAYLLDRE +RAKVLSN I +K+K+ Sbjct: 1 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKE 112
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_BOVIN (Ribosome biogenesis protein NSA2 homolog OS=Bos taurus GN=TINP1 PE=2 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 1.279e-34 Identity = 67/112 (59.82%), Postives = 92/112 (82.14%), Query Frame = -3 Query: 2 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTISKKKKK 337 MPQ +YIELHRKR GYRLD+ E+KRKKE RE H+RS+ A+K +G+K K++ K+R+AEK MKKT+ MHE+ ++++K D++ +GAVPAYLLDRE +RAKVLSN I +K+K+ Sbjct: 1 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKE 112
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_CANGA (Ribosome biogenesis protein NSA2 OS=Candida glabrata GN=NSA2 PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 3.373e-27 Identity = 62/111 (55.86%), Postives = 78/111 (70.27%), Query Frame = -3 Query: 8 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEG-AVPAYLLDRENTTRAKVLSNTISKKK 337 MPQ DYIE H K++G RLD+ ERKRK+EAREVHK +E AQK G KGK FAKKRYAEK M+K + HE+S ++ G A+P YLLDRE T AK +S++I +K+ Sbjct: 1 MPQNDYIERHIKQHGRRLDYEERKRKREAREVHKVAEKAQKLTGWKGKQFAKKRYAEKVAMRKKIKAHEQSKAKGSSKPLADNGEALPTYLLDREQTNTAKAISSSIKQKR 111
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_ASHGO (Ribosome biogenesis protein NSA2 OS=Ashbya gossypii GN=NSA2 PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 7.515e-27 Identity = 62/111 (55.86%), Postives = 76/111 (68.47%), Query Frame = -3 Query: 8 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEG-AVPAYLLDRENTTRAKVLSNTISKKK 337 MPQ +YIE H K++G RLDH ERKRK+EARE HK SE AQK G KGK FAKKRYAEK M+K + HE+S + G A+PAYLLDRE AK +S++I +K+ Sbjct: 1 MPQNEYIEQHIKKHGRRLDHEERKRKREAREAHKISEKAQKLTGWKGKQFAKKRYAEKVAMRKKIKAHEQSKLKGAAKPLEDSGEALPAYLLDREQANSAKAISSSIKQKR 111
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_KLULA (Ribosome biogenesis protein NSA2 OS=Kluyveromyces lactis GN=NSA2 PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 1.282e-26 Identity = 65/112 (58.04%), Postives = 78/112 (69.64%), Query Frame = -3 Query: 8 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSR--RKVDDEVQEGAVPAYLLDRENTTRAKVLSNTISKKK 337 MPQ +YIE H K++G RLDH ERKRK+EARE HK SE AQK G KGK FAKKRYAEK MKK + HE+S + K DE E A+P YLLDRE AK +S++I +K+ Sbjct: 1 MPQNEYIEQHIKQHGRRLDHDERKRKREAREAHKISEKAQKLTGWKGKQFAKKRYAEKVAMKKKIRAHEQSKVKGGSKPLDENGE-ALPTYLLDREQNNTAKAISSSIKQKR 111
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_YEAST (Ribosome biogenesis protein NSA2 OS=Saccharomyces cerevisiae GN=NSA2 PE=1 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 2.856e-26 Identity = 62/111 (55.86%), Postives = 76/111 (68.47%), Query Frame = -3 Query: 8 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEG-AVPAYLLDRENTTRAKVLSNTISKKK 337 MPQ DYIE H K++G RLDH ERKRK+EARE HK SE AQK G KGK FAKKRYAEK M+K + HE+S + +G A+P YLLDRE AK +S++I +K+ Sbjct: 1 MPQNDYIERHIKQHGKRLDHEERKRKREARESHKISERAQKLTGWKGKQFAKKRYAEKVSMRKKIKAHEQSKVKGSSKPLDTDGDALPTYLLDREQNNTAKAISSSIKQKR 111
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_YEAS7 (Ribosome biogenesis protein NSA2 OS=Saccharomyces cerevisiae (strain YJM789) GN=NSA2 PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 2.856e-26 Identity = 62/111 (55.86%), Postives = 76/111 (68.47%), Query Frame = -3 Query: 8 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEG-AVPAYLLDRENTTRAKVLSNTISKKK 337 MPQ DYIE H K++G RLDH ERKRK+EARE HK SE AQK G KGK FAKKRYAEK M+K + HE+S + +G A+P YLLDRE AK +S++I +K+ Sbjct: 1 MPQNDYIERHIKQHGKRLDHEERKRKREARESHKISERAQKLTGWKGKQFAKKRYAEKVSMRKKIKAHEQSKVKGSSKPLDTDGDALPTYLLDREQNNTAKAISSSIKQKR 111 The following BLAST results are available for this feature:
BLAST of CF835196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 29
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835196 ID=CF835196; Name=CF835196; organism=Citrus sinensis; type=EST; length=357bpback to top |