CF835197

Overview
NameCF835197
Unique NameCF835197
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length360
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2998 contig Csv1_Contig2998:702..1060. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835197 vs. ExPASy Swiss-Prot
Match: NSA2_DICDI (Ribosome biogenesis protein NSA2 homolog OS=Dictyostelium discoideum GN=nsa2 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.259e-34
Identity = 67/105 (63.81%), Postives = 87/105 (82.86%), Query Frame = 2
Query:   44 QLHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKKKK 358
            +LH+KR G RLDH+E+ RKK AR  HKRS IAQK  G+K K++ KKRY+EKA MKKT+AMH+E ++++  DD+V+EGAVPAYLLDRE  +RAKVLSN +KQK+K+
Sbjct:    8 ELHQKRFGRRLDHYEKVRKKTARAAHKRSAIAQKVTGLKAKLYNKKRYSEKAEMKKTIAMHQERTNKKASDDKVKEGAVPAYLLDREGVSRAKVLSNMVKQKRKE 112          
BLAST of CF835197 vs. ExPASy Swiss-Prot
Match: NSA2_HUMAN (Ribosome biogenesis protein NSA2 homolog OS=Homo sapiens GN=TINP1 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.919e-32
Identity = 63/105 (60.00%), Postives = 88/105 (83.81%), Query Frame = 2
Query:   44 QLHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKKKK 358
            +LHRKR GYRLD+ E+KRKKE+RE H+RS+ A+K +G+K K++ K+R+AEK  MKKT+ MHE+ ++++K D++  +GAVPAYLLDRE  +RAKVLSN IKQK+K+
Sbjct:    8 ELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKE 112          
BLAST of CF835197 vs. ExPASy Swiss-Prot
Match: NSA2_RAT (Ribosome biogenesis protein NSA2 homolog OS=Rattus norvegicus GN=Tinp1 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 7.730e-32
Identity = 63/105 (60.00%), Postives = 87/105 (82.86%), Query Frame = 2
Query:   44 QLHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKKKK 358
            +LHRKR GYRLD+ E+KRKKE RE H+RS+ A+K +G+K K++ K+R+AEK  MKKT+ MHE+ ++++K D++  +GAVPAYLLDRE  +RAKVLSN IKQK+K+
Sbjct:    8 ELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKE 112          
BLAST of CF835197 vs. ExPASy Swiss-Prot
Match: NSA2_MOUSE (Ribosome biogenesis protein NSA2 homolog OS=Mus musculus GN=Tinp1 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.730e-32
Identity = 63/105 (60.00%), Postives = 87/105 (82.86%), Query Frame = 2
Query:   44 QLHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKKKK 358
            +LHRKR GYRLD+ E+KRKKE RE H+RS+ A+K +G+K K++ K+R+AEK  MKKT+ MHE+ ++++K D++  +GAVPAYLLDRE  +RAKVLSN IKQK+K+
Sbjct:    8 ELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKE 112          
BLAST of CF835197 vs. ExPASy Swiss-Prot
Match: NSA2_BOVIN (Ribosome biogenesis protein NSA2 homolog OS=Bos taurus GN=TINP1 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.730e-32
Identity = 63/105 (60.00%), Postives = 87/105 (82.86%), Query Frame = 2
Query:   44 QLHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKKKK 358
            +LHRKR GYRLD+ E+KRKKE RE H+RS+ A+K +G+K K++ K+R+AEK  MKKT+ MHE+ ++++K D++  +GAVPAYLLDRE  +RAKVLSN IKQK+K+
Sbjct:    8 ELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKE 112          
BLAST of CF835197 vs. ExPASy Swiss-Prot
Match: NSA2_ASHGO (Ribosome biogenesis protein NSA2 OS=Ashbya gossypii GN=NSA2 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.542e-24
Identity = 58/102 (56.86%), Postives = 70/102 (68.63%), Query Frame = 2
Query:   50 HRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEG-AVPAYLLDRENTTRAKVLSNTIKQKK 352
            H K++G RLDH ERKRK+EARE HK SE AQK  G KGK FAKKRYAEK  M+K +  HE+S  +         G A+PAYLLDRE    AK +S++IKQK+
Sbjct:   10 HIKKHGRRLDHEERKRKREAREAHKISEKAQKLTGWKGKQFAKKRYAEKVAMRKKIKAHEQSKLKGAAKPLEDSGEALPAYLLDREQANSAKAISSSIKQKR 111          
BLAST of CF835197 vs. ExPASy Swiss-Prot
Match: NSA2_CANGA (Ribosome biogenesis protein NSA2 OS=Candida glabrata GN=NSA2 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.932e-24
Identity = 57/102 (55.88%), Postives = 72/102 (70.59%), Query Frame = 2
Query:   50 HRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEG-AVPAYLLDRENTTRAKVLSNTIKQKK 352
            H K++G RLD+ ERKRK+EAREVHK +E AQK  G KGK FAKKRYAEK  M+K +  HE+S ++         G A+P YLLDRE T  AK +S++IKQK+
Sbjct:   10 HIKQHGRRLDYEERKRKREAREVHKVAEKAQKLTGWKGKQFAKKRYAEKVAMRKKIKAHEQSKAKGSSKPLADNGEALPTYLLDREQTNTAKAISSSIKQKR 111          
BLAST of CF835197 vs. ExPASy Swiss-Prot
Match: NSA2_KLULA (Ribosome biogenesis protein NSA2 OS=Kluyveromyces lactis GN=NSA2 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.748e-24
Identity = 61/103 (59.22%), Postives = 72/103 (69.90%), Query Frame = 2
Query:   50 HRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSR--RKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKK 352
            H K++G RLDH ERKRK+EARE HK SE AQK  G KGK FAKKRYAEK  MKK +  HE+S  +   K  DE  E A+P YLLDRE    AK +S++IKQK+
Sbjct:   10 HIKQHGRRLDHDERKRKREAREAHKISEKAQKLTGWKGKQFAKKRYAEKVAMKKKIRAHEQSKVKGGSKPLDENGE-ALPTYLLDREQNNTAKAISSSIKQKR 111          
BLAST of CF835197 vs. ExPASy Swiss-Prot
Match: NSA2_CRYNE (Ribosome biogenesis protein NSA2 OS=Cryptococcus neoformans GN=NSA2 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.748e-24
Identity = 54/102 (52.94%), Postives = 72/102 (70.59%), Query Frame = 2
Query:   50 HRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKKK 355
            HRKR+G RLD+ E+KRK+ ARE HK S  AQK  G K K+   +R+AEK  MKKTL  H+E + ++K D  V+EGA+PAYLLDR+    AK LS+ +K ++K
Sbjct:    4 HRKRHGRRLDYEEKKRKRTAREAHKASADAQKIFGHKAKLHHARRHAEKVQMKKTLKAHDERNVKQKDDGAVKEGALPAYLLDRDGQKDAKALSSAVKDRRK 105          
BLAST of CF835197 vs. ExPASy Swiss-Prot
Match: NSA2_VANPO (Ribosome biogenesis protein NSA2 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=NSA2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.726e-23
Identity = 59/103 (57.28%), Postives = 73/103 (70.87%), Query Frame = 2
Query:   50 HRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSR--RKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKK 352
            H K++G RLDH ERKRK+EARE HK SE AQK  G KGK FAKKRY+EK  M+K +  HE+S  +   K  DE  + A+P YLLDRE T  AK +S++IKQK+
Sbjct:   10 HIKQHGRRLDHEERKRKREAREAHKISERAQKLTGWKGKQFAKKRYSEKVAMRKKIKAHEQSKVKGGSKPLDESGD-ALPTYLLDREQTNTAKAISSSIKQKR 111          
The following BLAST results are available for this feature:
BLAST of CF835197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
NSA2_DICDI8.259e-3463.81Ribosome biogenesis protein NSA2 homolog OS=Dictyo... [more]
NSA2_HUMAN5.919e-3260.00Ribosome biogenesis protein NSA2 homolog OS=Homo s... [more]
NSA2_RAT7.730e-3260.00Ribosome biogenesis protein NSA2 homolog OS=Rattus... [more]
NSA2_MOUSE7.730e-3260.00Ribosome biogenesis protein NSA2 homolog OS=Mus mu... [more]
NSA2_BOVIN7.730e-3260.00Ribosome biogenesis protein NSA2 homolog OS=Bos ta... [more]
NSA2_ASHGO4.542e-2456.86Ribosome biogenesis protein NSA2 OS=Ashbya gossypi... [more]
NSA2_CANGA5.932e-2455.88Ribosome biogenesis protein NSA2 OS=Candida glabra... [more]
NSA2_KLULA7.748e-2459.22Ribosome biogenesis protein NSA2 OS=Kluyveromyces ... [more]
NSA2_CRYNE7.748e-2452.94Ribosome biogenesis protein NSA2 OS=Cryptococcus n... [more]
NSA2_VANPO1.726e-2357.28Ribosome biogenesis protein NSA2 OS=Vanderwaltozym... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06N08_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835197 ID=CF835197; Name=CF835197; organism=Citrus sinensis; type=EST; length=360bp
CCGCTTCAAAGCCCTTACGAAATGCCGCAAGGAGATTACATACCAGCTTC
ACAGGAAGCGAAATGGCTACCGTCTCGATCACTTCGAGCGCAAGCGCAAG
AAGGAGGCGCGTGAAGTCCATAAGCGCTCCGAAATTGCCCAAAAGGCTTT
GGGTATTAAGGGCAAGATGTTTGCTAAAAAACGCTATGCTGAGAAGGCTC
TCATGAAGAAAACTTTGGCTATGCATGAAGAGTCATCAAGTCGTAGAAAG
GTGGATGATGAAGTTCAAGAGGGTGCTGTTCCTGCTTATTTGCTTGATCG
TGAAAACACAACAAGAGCGAAGGTGCTTAGCAACACTATAAAGCAAAAAA
AAAAAAAAAA
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