CF835222

Overview
NameCF835222
Unique NameCF835222
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9501 contig Csv1_Contig9501:501..1155. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835222 vs. ExPASy Swiss-Prot
Match: MOSC1_HUMAN (MOSC domain-containing protein 1, mitochondrial OS=Homo sapiens GN=MOSC1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.264e-18
Identity = 57/158 (36.08%), Postives = 86/158 (54.43%), Query Frame = -1
Query:  198 ESETRPVDPKYAAG-----EKIMFSDCYPFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLWMGIRINNCTFQGVKLCDRCKVPTINQDTGV-AGPEPSETLRQIRSDKVLRPNQKQQGKI-YFGQNLVWKDNLSNGKVLKLGDPVFVM 650
            E   RP  P   A      ++I +SD  PF++LS+ SL  LN  L++ +    FRPNI++ GC+ ++ED W  + I +   + V  C RC + T++ DTGV +  EP ETL+  R  +     +K  GK   FGQ  V    L N   +K+GDPV+++
Sbjct:  184 EPHMRPRRPHQIADLFRPKDQIAYSDTSPFLILSEASLADLNSRLEKKVKATNFRPNIVISGCDVYAEDSWDELLIGDVELKRVMACSRCILTTVDPDTGVMSRKEPLETLKSYR--QCDPSERKLYGKSPLFGQYFV----LENPGTIKVGDPVYLL 335          
BLAST of CF835222 vs. ExPASy Swiss-Prot
Match: MOSC2_BOVIN (MOSC domain-containing protein 2, mitochondrial OS=Bos taurus GN=MOSC2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.405e-17
Identity = 53/148 (35.81%), Postives = 77/148 (52.03%), Query Frame = -1
Query:  198 PKYAAGEKIMFSDCYPFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLWMGIRINNCTFQGVKLCDRCKVPTINQDTGVAG-PEPSETLRQIR----SDKVLRPNQKQQGKIYFGQNLVWKDNLSNGKVLKLGDPVFVM 626
            P      ++ + DC P M+LS+ SL  LN  +++ + IN FRPNI+V GC  F ED W  + I N   + +  C RC + T++ DTGV    EP ETL+  R    S+K +  +    G IY+    +          LK+GDPV+ M
Sbjct:  196 PSLDKNYQVAYPDCSPVMILSEASLADLNTRMEKKVKINNFRPNIVVTGCSAFEEDTWDELLIGNVEMKKILACPRCIMTTVDPDTGVIDRKEPLETLKSYRLCDPSEKSIYKSSPLFG-IYYSVEKIGS--------LKVGDPVYQM 334          
BLAST of CF835222 vs. ExPASy Swiss-Prot
Match: MOSC1_MOUSE (MOSC domain-containing protein 1, mitochondrial OS=Mus musculus GN=Mosc1 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.140e-17
Identity = 50/151 (33.11%), Postives = 85/151 (56.29%), Query Frame = -1
Query:  198 TRPVDPKYAAGEKIMFSDCYPFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLWMGIRINNCTFQGVKLCDRCKVPTINQDTGVAG-PEPSETLRQIRSDKVLRPN-QKQQGKI-YFGQNLVWKDNLSNGKVLKLGDPVFVM 641
            +R +   +   +++ +SD  PF++LS+ SL+ LN  L+  +    FRPNI++ GC  ++ED W  + I +   + V  C RC + T++ DTG++   EP ETL+  R   +  P+ Q   GK+  FGQ       L N   +++GDPV+++
Sbjct:  195 SRQMKAVFRTKDQVAYSDASPFLVLSEASLEDLNSRLERRVKATNFRPNIVISGCGVYAEDSWNEVLIGDVELKRVMACTRCLLTTVDPDTGISDRKEPLETLKSYR---LCDPSEQALYGKLPIFGQYFA----LENPGTIRVGDPVYLL 338          
BLAST of CF835222 vs. ExPASy Swiss-Prot
Match: MOSC1_XENLA (MOSC domain-containing protein 1, mitochondrial OS=Xenopus laevis GN=mosc1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.559e-16
Identity = 53/140 (37.86%), Postives = 78/140 (55.71%), Query Frame = -1
Query:  192 IMFSDCYPFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLWMGIRINNCTFQGVKLCDRCKVPTINQDTGV-AGPEPSETLRQIR-SDKVLRPNQKQQGKIYFGQNLVWKDNLSNGKVLKLGDPVF-VMRK 602
            I + D  P MLLS+ S++ALN  L++P+ +  FRP I+  GCE F+ED W  +R+     + V  C RC + T+N ++GV    EP +TLR  R SD  L+   K      FGQ       +    ++++GDPV+ V RK
Sbjct:  209 IAYPDASPIMLLSETSMEALNSRLEQPVSLANFRPCIVASGCEAFAEDDWDDVRLGATRLKRVMACGRCVLTTVNPNSGVITRKEPLDTLRTFRQSDSSLKEVYKNAP--LFGQYY----GVEQTGIIRVGDPVYRVTRK 342          
BLAST of CF835222 vs. ExPASy Swiss-Prot
Match: MOSC2_MOUSE (MOSC domain-containing protein 2, mitochondrial OS=Mus musculus GN=Mosc2 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.723e-15
Identity = 51/144 (35.42%), Postives = 75/144 (52.08%), Query Frame = -1
Query:  198 YAAGEKIMFSDCYPFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLWMGIRINNCTFQGVKLCDRCKVPTINQDTGVAG-PEPSETLRQIRSDKVLRPNQKQ--QGKIYFGQNLVWKDNLSNGKVLKLGDPVFVM 620
            Y    ++ + DC P  L+S+ SL  LN  LK+ + +  FRPNI+V GCE F ED W  + I +   + V  C RC + T++ DTG+    EP ETL+  R   +  P+ K   Q    FG       ++     L++GDPV+ M
Sbjct:  200 YLQNYEVAYPDCSPVHLISEASLVDLNTRLKKKVKMEYFRPNIVVSGCEAFEEDTWDELLIGDVEMKRVLSCPRCVLTTVDPDTGIIDRKEPLETLKSYR---LCDPSVKSIYQSSPLFGMYF----SVEKLGSLRVGDPVYRM 336          
BLAST of CF835222 vs. ExPASy Swiss-Prot
Match: MOSC2_RAT (MOSC domain-containing protein 2, mitochondrial OS=Rattus norvegicus GN=Mosc2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.839e-15
Identity = 50/144 (34.72%), Postives = 75/144 (52.08%), Query Frame = -1
Query:  198 YAAGEKIMFSDCYPFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLWMGIRINNCTFQGVKLCDRCKVPTINQDTGVAG-PEPSETLRQIRSDKVLRPNQKQ--QGKIYFGQNLVWKDNLSNGKVLKLGDPVFVM 620
            Y    ++ + DC P  L+S+ SL  LN  L++ + +  FRPNI+V GCE F ED W  + I +   + V  C RC + T++ DTG+    EP ETL+  R   +  P+ K   Q    FG       ++     L++GDPV+ M
Sbjct:  200 YLQNYEVAYPDCSPIHLISEASLVDLNTRLQKKVKMEYFRPNIVVSGCEAFEEDTWDELLIGDVEMKRVLSCPRCVLTTVDPDTGIIDRKEPLETLKSYR---LCDPSVKSLYQSSPLFGMYF----SVEKIGSLRVGDPVYRM 336          
BLAST of CF835222 vs. ExPASy Swiss-Prot
Match: YCBX_ECOLI (Uncharacterized protein ycbX OS=Escherichia coli (strain K12) GN=ycbX PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.548e-15
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = -1
Query:  198 IMFSDCYPFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLWMGIRINNCTFQGVKLCDRCKVPTINQDTGVAGP--EPSETLRQIRSDKVLRPNQKQQGKIYFGQNLVWKDNLSNGKVLKLGDPVFVM 602
            + F+D YP++L ++ SL  L +     + + +FRPN++V G   + ED W  IRI +  F  VK C RC   T++ + G   P  EP +TL+  R+        +  G + FGQNL+ +    N  V+++GD V ++
Sbjct:  139 LSFADGYPYLLANEASLRDLQQRCPASVKMEQFRPNLVVSGASAWEEDRWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPAGEPLKTLQSFRT-------AQDNGDVDFGQNLIAR----NSGVIRVGDEVEIL 264          
BLAST of CF835222 vs. ExPASy Swiss-Prot
Match: MOSC2_MACFA (MOSC domain-containing protein 2, mitochondrial OS=Macaca fascicularis GN=MOSC2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.456e-14
Identity = 43/154 (27.92%), Postives = 80/154 (51.95%), Query Frame = -1
Query:  198 TRPVDPKYAAGEKIMFSDCYPFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLWMGIRINNCTFQGVKLCDRCKVPTINQDTGVAGPEPSETLRQIRSDKVLRPNQKQQGK------IYFGQNLVWKDNLSNGKVLKLGDPVFVM 641
            +R + P      ++ + DC P ++++  SL  LN  +++ + +  FRPNI+V GC+ F ED W  + I +   + +  C RC + T++ DTGV   +  E L  ++S ++  P++++  K      IY+    +          L++GDPV+ M
Sbjct:  191 SRKLLPTLDQNYQVAYPDCSPLLIMTDASLVDLNTRIEKKMKMENFRPNIVVTGCDAFEEDTWDELLIGSVEVKKIMACPRCILTTVDPDTGVI--DRKEPLDTLKSYRLCDPSERELYKLSPLFGIYYSVEKIGS--------LRVGDPVYRM 334          
BLAST of CF835222 vs. ExPASy Swiss-Prot
Match: MOSC1_DANRE (MOSC domain-containing protein 1, mitochondrial OS=Danio rerio GN=mosc1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.235e-13
Identity = 44/143 (30.77%), Postives = 73/143 (51.05%), Query Frame = -1
Query:  204 DPKYAAGEKIMFSDCYPFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLWMGIRINNCTFQGVKLCDRCKVPTINQDTGV-AGPEPSETLRQIRSDKVLRPNQKQQGKIYFGQNLVWKDNLSNGKVLKLGDPVF 629
            +P +   +++ + D  P ML+++ S+  LN  L + + + +FRP+I+V  CE F+ED W  IRI     + V  C RC   T++ +TGV +  EP ETL+  R     +      G+ Y          +    VL +G+PV+
Sbjct:  188 EPLFPKDDEVAYPDAAPVMLMTEASVGDLNSRLDKDLSVFQFRPSIVVSDCEAFTEDTWDHIRIGEVELKRVIGCGRCLFTTVDPETGVFSRKEPLETLKTYRMTDPKQKTSPILGQYY---------TVRKTGVLHVGEPVY 321          
BLAST of CF835222 vs. ExPASy Swiss-Prot
Match: MOSC2_HUMAN (MOSC domain-containing protein 2, mitochondrial OS=Homo sapiens GN=MOSC2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.973e-12
Identity = 42/154 (27.27%), Postives = 79/154 (51.30%), Query Frame = -1
Query:  198 TRPVDPKYAAGEKIMFSDCYPFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLWMGIRINNCTFQGVKLCDRCKVPTINQDTGVAGPEPSETLRQIRSDKVLRPNQKQQGK------IYFGQNLVWKDNLSNGKVLKLGDPVFVM 641
            +R + P      ++ + D  P ++++  SL  LN  +++ + +  FRPNI+V GC+ F ED W  + I +   + V  C RC + T++ DTGV   +  + L  ++S ++  P++++  K      IY+    +          L++GDPV+ M
Sbjct:  191 SRKLLPTLDQNFQVAYPDYCPLLIMTDASLVDLNTRMEKKMKMENFRPNIVVTGCDAFEEDTWDELLIGSVEVKKVMACPRCILTTVDPDTGVI--DRKQPLDTLKSYRLCDPSERELYKLSPLFGIYYSVEKIGS--------LRVGDPVYRM 334          
The following BLAST results are available for this feature:
BLAST of CF835222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
MOSC1_HUMAN8.264e-1836.08MOSC domain-containing protein 1, mitochondrial OS... [more]
MOSC2_BOVIN2.405e-1735.81MOSC domain-containing protein 2, mitochondrial OS... [more]
MOSC1_MOUSE3.140e-1733.11MOSC domain-containing protein 1, mitochondrial OS... [more]
MOSC1_XENLA1.559e-1637.86MOSC domain-containing protein 1, mitochondrial OS... [more]
MOSC2_MOUSE1.723e-1535.42MOSC domain-containing protein 2, mitochondrial OS... [more]
MOSC2_RAT3.839e-1534.72MOSC domain-containing protein 2, mitochondrial OS... [more]
YCBX_ECOLI6.548e-1532.85Uncharacterized protein ycbX OS=Escherichia coli (... [more]
MOSC2_MACFA9.456e-1427.92MOSC domain-containing protein 2, mitochondrial OS... [more]
MOSC1_DANRE1.235e-1330.77MOSC domain-containing protein 1, mitochondrial OS... [more]
MOSC2_HUMAN3.973e-1227.27MOSC domain-containing protein 2, mitochondrial OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06N23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06N23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835222 ID=CF835222; Name=CF835222; organism=Citrus sinensis; type=EST; length=656bp
TTTTTTTTTTTTTTTTTCTCTGGAAATGGGCACCTTGCTGTGGCATACCC
ATGCAACAAACCANGTTTCTTATTCCACTAGACAATGATACCCACACAAC
AGAGTTTAATTTATTGGCCCCAACAACAGCATTAGCATTACTAACAAATA
TTCAATAGAGCTCAAGCTGCTGCCTCAGCTGCAGAATTGACCTTCCTCAT
GACAAAAACCGGATCCCCAAGTTTAAGCACCTTTCCATTACTAAGGTTGT
CCTTCCACACCAAGTTCTGCCCAAAGTATATCTTTCCCTGCTGTTTTTGA
TTTGGACGCAAAACTTTATCTGACCTAATTTGCCTTAGTGTTTCACTTGG
TTCGGGACCAGCAACACCAGTGTCTTGATTGATAGTTGGCACCTTACAGC
GGTCACACAGCTTAACACCTTGAAATGTGCAATTGTTTATTCGGATGCCC
ATCCATAAGTCCTCAGAAAACGGTTCACAACCATCAACAAGGATGTTTGG
TCGAAAACGGTTAATTGGAATAGGCTCCTTGAGAAGCTTATTAAGTGCAT
CCAAAGATCCCTGAGACAACAGCATAAATGGATAACAATCAGAAAACATT
ATTTTCTCTCCAGCAGCATATTTGGGATCGACAGGTCTAGTTTCTGATTC
TGCATT
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