CF835233

Overview
NameCF835233
Unique NameCF835233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length536
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3190 contig Csv1_Contig3190:335..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: PAB2_SCHPO (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe GN=pab2 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.000e-20
Identity = 57/96 (59.38%), Postives = 61/96 (63.54%), Query Frame = -3
Query:  265 VQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPR-----RFNPYMGYRGRRPYVPPY 534
            +Q HF SCG+VNRVTIL DKF G PKGFAY+EF E   V  AL LN S LH R LKV PKRTNVPGM + R R     R     GYRGR     PY
Sbjct:   71 LQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGRGRGRGRGGYRGRARGFAPY 166          
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: EPA2B_XENLA (Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis GN=epabp2-B PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.022e-17
Identity = 46/97 (47.42%), Postives = 65/97 (67.01%), Query Frame = -3
Query:  265 VQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ-----YRPR-RFNPYMGYRGRRPYVPPY 534
            ++ HF SCG++NR+TIL DKF G PKG+AY+EF E ++V  A+ ++E+   GR +KVLPKRTN+PG+       +R R R N     RG+RP   P+
Sbjct:  109 LEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRPRGRPF 205          
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: EPA2A_XENLA (Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis GN=epabp2-A PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.022e-17
Identity = 46/97 (47.42%), Postives = 65/97 (67.01%), Query Frame = -3
Query:  265 VQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ-----YRPR-RFNPYMGYRGRRPYVPPY 534
            ++ HF SCG++NR+TIL DKF G PKG+AY+EF E ++V  A+ ++E+   GR +KVLPKRTN+PG+       +R R R N     RG+RP   P+
Sbjct:  109 LEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRPRGRPF 205          
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: PABP2_MOUSE (Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.342e-16
Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = -3
Query:  286 VQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 534
            ++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  184 LEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIS--TTDRGFPRSRYRAR 265          
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: PABP2_HUMAN (Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.342e-16
Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = -3
Query:  286 VQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 534
            ++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  188 LEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIS--TTDRGFPRARYRAR 269          
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: PABP2_BOVIN (Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.342e-16
Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = -3
Query:  286 VQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 534
            ++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  188 LEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIS--TTDRGFPRARYRAR 269          
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: PAB2A_XENLA (Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-A PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.342e-16
Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = -3
Query:  286 VQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 534
            ++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  179 LEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIS--TTDRGFPRARYRAR 260          
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: PAB2B_XENLA (Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-B PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.752e-16
Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = -3
Query:  286 VQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 534
            ++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  178 LEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIS--TTDRGFPRARYRAR 259          
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: PABP2_XENTR (Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.904e-16
Identity = 44/84 (52.38%), Postives = 58/84 (69.05%), Query Frame = -3
Query:  286 VQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 534
            ++ HF  CG+VNRVTIL DK+ G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  179 LEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIS--TTDRGFPRARYRAR 260          
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: PABP2_DROME (Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.305e-15
Identity = 47/113 (41.59%), Postives = 59/113 (52.21%), Query Frame = -3
Query:  265 VQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRP----------------------RRFNPYMGYRGRRPYVPPY 534
            ++ HF  CGT+NRVTIL +K  G PKGFAY+EF   + V+ AL +NE+   GRQ+KV+ KRTN PG+                           R     MGYRGR  Y  PY
Sbjct:  112 LEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRGARRAMGYRGRANYYAPY 224          
The following BLAST results are available for this feature:
BLAST of CF835233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PAB2_SCHPO2.000e-2059.38Polyadenylate-binding protein 2 OS=Schizosaccharom... [more]
EPA2B_XENLA6.022e-1747.42Embryonic polyadenylate-binding protein 2-B OS=Xen... [more]
EPA2A_XENLA6.022e-1747.42Embryonic polyadenylate-binding protein 2-A OS=Xen... [more]
PABP2_MOUSE1.342e-1653.57Polyadenylate-binding protein 2 OS=Mus musculus GN... [more]
PABP2_HUMAN1.342e-1653.57Polyadenylate-binding protein 2 OS=Homo sapiens GN... [more]
PABP2_BOVIN1.342e-1653.57Polyadenylate-binding protein 2 OS=Bos taurus GN=P... [more]
PAB2A_XENLA1.342e-1653.57Polyadenylate-binding protein 2-A OS=Xenopus laevi... [more]
PAB2B_XENLA1.752e-1653.57Polyadenylate-binding protein 2-B OS=Xenopus laevi... [more]
PABP2_XENTR3.904e-1652.38Polyadenylate-binding protein 2 OS=Xenopus tropica... [more]
PABP2_DROME3.305e-1541.59Polyadenylate-binding protein 2 OS=Drosophila mela... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835233 ID=CF835233; Name=CF835233; organism=Citrus sinensis; type=EST; length=536bp
TTTTTTTTTTTTTTTTTCCATAAAGTTCATGCTAATAATGTTTGATCATC
TCTTTACATCAATAATAAACATGTAGCTAATAAATCCTTTGTTTCCTATC
TAAAGCAGGATACATAAGCACCATGATACATTGAATTTTTCAGTTTATGG
ATGATCCACAAATGTCACCATCTTCAACAGGAGCACAATCTGCTAGTAGT
AGGGCATGTACCTCATTGGCCTTCTGAACCTCGGAACCTTCCCATATCCA
TAAGGTGAATAGAAATAAGGAGGTACATAGGGCCTCCTGCCTCGGTACCC
CATGTAAGGATTGAAACGCCTTGGACGATACTGCTTCATACCAGGGACAT
TTGTCCTCTTAGGTAAAACCTTCAGTTGACGGCCATGTAATTCAGACTCA
TTCAACTGGAGAGCCTCTTGAACAGCATCTATTTCAAGGAATTCCACATA
AGCAAAACCCTTTGGCTGGCCAAACTTGTCTGTCAGAATAGTTACCCTGT
TTACAGTACCACAGGATTGGAAATGTTGCTGCACTT
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