CF835233
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: PAB2_SCHPO (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe GN=pab2 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 2.000e-20 Identity = 57/96 (59.38%), Postives = 61/96 (63.54%), Query Frame = -3 Query: 265 VQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPR-----RFNPYMGYRGRRPYVPPY 534 +Q HF SCG+VNRVTIL DKF G PKGFAY+EF E V AL LN S LH R LKV PKRTNVPGM + R R R GYRGR PY Sbjct: 71 LQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGRGRGRGRGGYRGRARGFAPY 166
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: EPA2B_XENLA (Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis GN=epabp2-B PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 6.022e-17 Identity = 46/97 (47.42%), Postives = 65/97 (67.01%), Query Frame = -3 Query: 265 VQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ-----YRPR-RFNPYMGYRGRRPYVPPY 534 ++ HF SCG++NR+TIL DKF G PKG+AY+EF E ++V A+ ++E+ GR +KVLPKRTN+PG+ +R R R N RG+RP P+ Sbjct: 109 LEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRPRGRPF 205
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: EPA2A_XENLA (Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis GN=epabp2-A PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 6.022e-17 Identity = 46/97 (47.42%), Postives = 65/97 (67.01%), Query Frame = -3 Query: 265 VQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ-----YRPR-RFNPYMGYRGRRPYVPPY 534 ++ HF SCG++NR+TIL DKF G PKG+AY+EF E ++V A+ ++E+ GR +KVLPKRTN+PG+ +R R R N RG+RP P+ Sbjct: 109 LEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRPRGRPF 205
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: PABP2_MOUSE (Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3) HSP 1 Score: 85.8853 bits (211), Expect = 1.342e-16 Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = -3 Query: 286 VQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 534 ++ HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES GRQ+KV+PKRTN PG+ R P YR R Sbjct: 184 LEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIS--TTDRGFPRSRYRAR 265
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: PABP2_HUMAN (Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3) HSP 1 Score: 85.8853 bits (211), Expect = 1.342e-16 Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = -3 Query: 286 VQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 534 ++ HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES GRQ+KV+PKRTN PG+ R P YR R Sbjct: 188 LEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIS--TTDRGFPRARYRAR 269
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: PABP2_BOVIN (Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3) HSP 1 Score: 85.8853 bits (211), Expect = 1.342e-16 Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = -3 Query: 286 VQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 534 ++ HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES GRQ+KV+PKRTN PG+ R P YR R Sbjct: 188 LEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIS--TTDRGFPRARYRAR 269
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: PAB2A_XENLA (Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-A PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.342e-16 Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = -3 Query: 286 VQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 534 ++ HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES GRQ+KV+PKRTN PG+ R P YR R Sbjct: 179 LEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIS--TTDRGFPRARYRAR 260
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: PAB2B_XENLA (Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-B PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.752e-16 Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = -3 Query: 286 VQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 534 ++ HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES GRQ+KV+PKRTN PG+ R P YR R Sbjct: 178 LEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIS--TTDRGFPRARYRAR 259
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: PABP2_XENTR (Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 3.904e-16 Identity = 44/84 (52.38%), Postives = 58/84 (69.05%), Query Frame = -3 Query: 286 VQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 534 ++ HF CG+VNRVTIL DK+ G PKGFAY+EF + ++V+ +L L+ES GRQ+KV+PKRTN PG+ R P YR R Sbjct: 179 LEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIS--TTDRGFPRARYRAR 260
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: PABP2_DROME (Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2 PE=1 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 3.305e-15 Identity = 47/113 (41.59%), Postives = 59/113 (52.21%), Query Frame = -3 Query: 265 VQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRP----------------------RRFNPYMGYRGRRPYVPPY 534 ++ HF CGT+NRVTIL +K G PKGFAY+EF + V+ AL +NE+ GRQ+KV+ KRTN PG+ R MGYRGR Y PY Sbjct: 112 LEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRGARRAMGYRGRANYYAPY 224 The following BLAST results are available for this feature:
BLAST of CF835233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835233 ID=CF835233; Name=CF835233; organism=Citrus sinensis; type=EST; length=536bpback to top |