CF835242

Overview
NameCF835242
Unique NameCF835242
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length227
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6351 contig Csv1_Contig6351:227..453. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SMT3_ORYSJ (Ubiquitin-like protein SMT3 OS=Oryza sativa subsp. japonica GN=SMT3 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.248e-29
Identity = 61/69 (88.41%), Postives = 67/69 (97.10%), Query Frame = -3
Query:   19 GNEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGGML 225
            GNEVFFRIKRSTQ+KK+MNAYCDRQSV++N+IAFLFDGRRLRGEQTPDELEMEDG+EIDAML QTGG L
Sbjct:   30 GNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGCL 98          
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SMT3_ARATH (Ubiquitin-like protein SMT3 OS=Arabidopsis thaliana GN=SMT3 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 1.379e-28
Identity = 59/67 (88.06%), Postives = 65/67 (97.01%), Query Frame = -3
Query:   25 GNEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGG 225
            GNEVFFRIKRSTQ+KK+MNAYCDRQSV++NSIAFLFDGRRLR EQTPDEL+MEDG+EIDAML QTGG
Sbjct:   27 GNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGG 93          
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: PMT3_SCHPO (Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe GN=pmt3 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.524e-16
Identity = 37/66 (56.06%), Postives = 51/66 (77.27%), Query Frame = -3
Query:   25 NEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGG 222
            NEVFF+IK++T+  K+M  YC RQ   +NS+ FL DG R+R +QTP EL+MEDG++I+A+L Q GG
Sbjct:   46 NEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQTPAELDMEDGDQIEAVLEQLGG 111          
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SUMO3_XENTR (Small ubiquitin-related modifier 3 OS=Xenopus tropicalis GN=sumo3 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.032e-12
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = -3
Query:   22 GNEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGGM 225
            G+ V F+IKR T + K+M AYCDRQ + +  I F FDG+ +    TP +LEMED + ID    QTGG+
Sbjct:   26 GSVVQFKIKRHTPLSKLMKAYCDRQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 93          
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SUMO3_XENLA (Small ubiquitin-related modifier 3 OS=Xenopus laevis GN=sumo3 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.032e-12
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = -3
Query:   22 GNEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGGM 225
            G+ V F+IKR T + K+M AYCDRQ + +  I F FDG+ +    TP +LEMED + ID    QTGG+
Sbjct:   26 GSVVQFKIKRHTPLSKLMKAYCDRQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 93          
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SMT3_YEAST (Ubiquitin-like protein SMT3 OS=Saccharomyces cerevisiae GN=SMT3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.032e-12
Identity = 29/66 (43.94%), Postives = 51/66 (77.27%), Query Frame = -3
Query:   25 NEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGG 222
            +E+FF+IK++T ++++M A+  RQ  E++S+ FL+DG R++ +QTP++L+MED + I+A   Q GG
Sbjct:   33 SEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 98          
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SUMO1_XENTR (Small ubiquitin-related modifier 1 OS=Xenopus tropicalis GN=sumo1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.878e-12
Identity = 30/66 (45.45%), Postives = 46/66 (69.70%), Query Frame = -3
Query:   25 NEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGG 222
            +E+ F++K +T +KK+  +YC RQ V +NS+ FLF+G+R+   QTP EL ME+ + I+    QTGG
Sbjct:   33 SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRISDHQTPKELGMEEEDVIEVYQEQTGG 98          
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SMO1B_XENLA (Small ubiquitin-related modifier 1-B OS=Xenopus laevis GN=sumo1-B PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.878e-12
Identity = 30/66 (45.45%), Postives = 46/66 (69.70%), Query Frame = -3
Query:   25 NEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGG 222
            +E+ F++K +T +KK+  +YC RQ V +NS+ FLF+G+R+   QTP EL ME+ + I+    QTGG
Sbjct:   33 SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRISDHQTPKELGMEEEDVIEVYQEQTGG 98          
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SUMO3_CHICK (Small ubiquitin-related modifier 3 OS=Gallus gallus GN=SUMO3 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.983e-12
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = -3
Query:   22 GNEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGGM 225
            G+ V F+IKR T + K+M AYC+RQ + +  I F FDG+ +    TP +LEMED + ID    QTGG+
Sbjct:   26 GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINEADTPAQLEMEDEDTIDVFQQQTGGL 93          
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SUMO3_HUMAN (Small ubiquitin-related modifier 3 OS=Homo sapiens GN=SUMO3 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.173e-11
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = -3
Query:   22 GNEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGGM 225
            G+ V F+IKR T + K+M AYC+RQ + +  I F FDG+ +    TP +LEMED + ID    QTGG+
Sbjct:   26 GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 93          
The following BLAST results are available for this feature:
BLAST of CF835242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
SMT3_ORYSJ1.248e-2988.41Ubiquitin-like protein SMT3 OS=Oryza sativa subsp.... [more]
SMT3_ARATH1.379e-2888.06Ubiquitin-like protein SMT3 OS=Arabidopsis thalian... [more]
PMT3_SCHPO3.524e-1656.06Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharo... [more]
SUMO3_XENTR4.032e-1248.53Small ubiquitin-related modifier 3 OS=Xenopus trop... [more]
SUMO3_XENLA4.032e-1248.53Small ubiquitin-related modifier 3 OS=Xenopus laev... [more]
SMT3_YEAST4.032e-1243.94Ubiquitin-like protein SMT3 OS=Saccharomyces cerev... [more]
SUMO1_XENTR6.878e-1245.45Small ubiquitin-related modifier 1 OS=Xenopus trop... [more]
SMO1B_XENLA6.878e-1245.45Small ubiquitin-related modifier 1-B OS=Xenopus la... [more]
SUMO3_CHICK8.983e-1247.06Small ubiquitin-related modifier 3 OS=Gallus gallu... [more]
SUMO3_HUMAN1.173e-1147.06Small ubiquitin-related modifier 3 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835242 ID=CF835242; Name=CF835242; organism=Citrus sinensis; type=EST; length=227bp
ATTACCTAATTAGAACATCAGCATTCCTCCGGTTTGGAGCAGCATGGCAT
CAATCTCCTCGCCATCTTCCATTTCCAGCTCATCAGGGGTTTGCTCTCCT
CGAAGACGGCGACCATCAAACAAGAAGGCAATTGAGTTCAGCTCCACAGA
TTGCCTATCACAGTATGCATTCATAACCTTCTTTACTTGGGTGCTTCGCT
TGATCCGGAAGAAAACCTCATTCCCAT
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