CF835259

Overview
NameCF835259
Unique NameCF835259
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835259 vs. ExPASy Swiss-Prot
Match: GIGAN_ARATH (Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 3.209e-61
Identity = 119/173 (68.79%), Postives = 138/173 (79.77%), Query Frame = -3
Query:  120 LIVELMRIYDSPESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPILRWGKSGLAIADGLSNLLKCRLPATIRCLFHPSAHVRALSTSVFCDFLHTSSF----KSNIEQVERNGIHGFSLHYFNIDPINWQSDIEKCLTWEAHSRLATGIPIQFFDIAAKEL 626
            ++VELMR +D PESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQP+L WG SGLA+ DGLSNLLKCRLPATIRCL HPSAHVRALSTSV  D ++ SS        +   E+NG++  S  +FN   I+W++DI+ CL WEAHS L+T +P QF D AA+EL
Sbjct:  993 VLVELMRNHDRPESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPVLAWGPSGLAVVDGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDIMNQSSIPIKVTPKLPTTEKNGMNSPSYRFFNAASIDWKADIQNCLNWEAHSLLSTTMPTQFLDTAAREL 1165          
BLAST of CF835259 vs. ExPASy Swiss-Prot
Match: GIGAN_ORYSJ (Protein GIGANTEA OS=Oryza sativa subsp. japonica GN=GI PE=2 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 5.302e-56
Identity = 112/171 (65.50%), Postives = 130/171 (76.02%), Query Frame = -3
Query:  120 LIVELMRIYDSPESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPILRWGKSGLAIADGLSNLLKCRLPATIRCLFHPSAHVRALSTSVFCDFLHTSSFKSN--IEQVERNGIHGFSLHYFNIDPINWQSDIEKCLTWEAHSRLATGIPIQFFDIAAKEL 626
            LI ELMR +DSPE+LVILASASDLLLRATDGMLVDGEACTLPQLELLE TARA+  I+ WG SG+++ADGLSNLLKCRL  TIRCL HPSAHVRALS SV  D L++    S+  I+   RNGI   +        INWQ+D+E+C+ WEAHSR ATG+ + F   AAKEL
Sbjct:  984 LIAELMRNHDSPEALVILASASDLLLRATDGMLVDGEACTLPQLELLEVTARAVHLIVEWGDSGVSVADGLSNLLKCRLSTTIRCLSHPSAHVRALSMSVLRDILNSGQINSSKLIQGEHRNGIQSPTYQCLAASIINWQADVERCIEWEAHSRRATGLTLAFLTAAAKEL 1154          
The following BLAST results are available for this feature:
BLAST of CF835259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GIGAN_ARATH3.209e-6168.79Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=... [more]
GIGAN_ORYSJ5.302e-5665.50Protein GIGANTEA OS=Oryza sativa subsp. japonica G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06O21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835259 ID=CF835259; Name=CF835259; organism=Citrus sinensis; type=EST; length=628bp
ATTGATCTGGGTTATTACCNATCCATAAATCTCACCTTGGAAAAATAAAT
TAATAATCACAAACNCTCAAATGAGCTGCTGTAGGGTATTTTTATTTCAT
ATAAGATATTGTACAACCATAATTCCTTGGCAGCGATATCAAAAAACTGA
ATCGGGATTCCTGTTGCAAGTCGGCTATGGGCTTCCCAAGTTAAGCATTT
TTCGATGTCAGATTGCCAGTTAATTGGATCAATATTGAAGTAGTGTAACG
AAAACCCATGGATGCCATTTCTCTCTACTTGCTCAATATTTGATTTGAAC
GAACTGGTATGTAAAAAGTCACAAAAAACTGAAGTGCTCAGTGCACGGAC
ATGGGCACTTGGATGAAAAAGGCATCGGATCGTTGCAGGTAAACGACACT
TTAAAAGGTTTGAAAGACCATCTGCAATTGCTAATCCAGACTTTCCCCAC
CGCAGGATGGGCTGAATTGCTCTAGCTGTTGCTTCCAGTAACTCAAGTTG
TGGCAGTGTGCAAGCTTCACCATCAACAAGCATCCCGTCTGTGGCACGTA
AAAGCAGGTCTGATGCGCTTGCCAATATTACCAGTGACTCTGGACTGTCA
TAAATTCTCATCAGCTCCACAATAAGTT
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