CF835260

Overview
NameCF835260
Unique NameCF835260
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2683 contig Csv1_Contig2683:901..1611. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835260 vs. ExPASy Swiss-Prot
Match: GIGAN_ARATH (Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2)

HSP 1 Score: 329.717 bits (844), Expect = 9.313e-90
Identity = 175/241 (72.61%), Postives = 197/241 (81.74%), Query Frame = 1
Query:    7 EQIELSAAEATIEATAQGIASVLCAHGPEVEWRI*TIWEAAYGLITLSSSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVEAIIKRTFPPESSPENTRRARHLSGIGSASKNLAVAELRTMVHSLFLESCASVELASRLLFIVLTVCVSHEAQSNGSKKPRGE-----ENYFPDESTEDLQ-KDLRTRKVKRQGPVAAFDSYXXXXXXXXXXELQLVPLV 711
            +QIE+ AAEATIEATAQGIAS+LCAHGPEVEWRI TIWEAAYGLI L+SSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVE I+ RTFPPESS E TR+AR      SA+KNLA++ELR MVH+LFLESCA VELASRLLF+VLTVCVSHEAQS+GSK+PR E     EN   ++   + Q  + ++R VK QGPVAAFDSY          E+QL P++
Sbjct:  429 KQIEVPAAEATIEATAQGIASMLCAHGPEVEWRICTIWEAAYGLIPLNSSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVETILSRTFPPESSRELTRKARSSFTTRSATKNLAMSELRAMVHALFLESCAGVELASRLLFVVLTVCVSHEAQSSGSKRPRSEYASTTENIEANQPVSNNQTANRKSRNVKGQGPVAAFDSYVLAAVCALACEVQLYPMI 669          
BLAST of CF835260 vs. ExPASy Swiss-Prot
Match: GIGAN_ORYSJ (Protein GIGANTEA OS=Oryza sativa subsp. japonica GN=GI PE=2 SV=2)

HSP 1 Score: 307.76 bits (787), Expect = 3.790e-83
Identity = 160/235 (68.09%), Postives = 189/235 (80.43%), Query Frame = 1
Query:   10 QIELSAAEATIEATAQGIASVLCAHGPEVEWRI*TIWEAAYGLITLSSSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVEAIIKRTFPPESSPENTRRARHLSGIGSASKNLAVAELRTMVHSLFLESCASVELASRLLFIVLTVCVSHEAQSNGSKKPRGEENYFPDESTEDLQ-KDLRTRKVKRQGPVAAFDSYXXXXXXXXXXELQLVPLV 711
            Q+E+ A+EATI+ATAQGIAS+LCAHGP+VEWRI TIWEAAYGL+ LSSSAVDLPEI+VA PLQPP LSW+LY+PLLKV EYLPRGSPSEACLM+IFVATVEAI++RTFP E+S E +R+ R      S SKNLAVAELRTM+HSLF+ESCAS++LASRLLF+VLTVCVSH+A   GSK+P G +N+  +E T D +  + R R  KRQGPVA FDSY          ELQL P +
Sbjct:  433 QLEVPASEATIDATAQGIASMLCAHGPDVEWRICTIWEAAYGLLPLSSSAVDLPEIVVAAPLQPPTLSWSLYLPLLKVFEYLPRGSPSEACLMRIFVATVEAILRRTFPSETS-EQSRKPR------SQSKNLAVAELRTMIHSLFVESCASMDLASRLLFVVLTVCVSHQALPGGSKRPTGSDNHSSEEVTNDSRLTNGRNRCKKRQGPVATFDSYVLAAVCALSCELQLFPFI 660          
The following BLAST results are available for this feature:
BLAST of CF835260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GIGAN_ARATH9.313e-9072.61Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=... [more]
GIGAN_ORYSJ3.790e-8368.09Protein GIGANTEA OS=Oryza sativa subsp. japonica G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06O21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835260 ID=CF835260; Name=CF835260; organism=Citrus sinensis; type=EST; length=711bp
TCTGCGGAGCAGATAGAGCTGTCTGCAGCTGAAGCAACTATTGAAGCCAC
TGCTCAAGGCATTGCATCGGTGCTTTGTGCTCATGGCCCTGAGGTGGAAT
GGAGAATCTGAACAATATGGGAAGCAGCTTATGGCCTGATTACTTTAAGT
TCCTCAGCAGTTGATCTTCCTGAAATTATAGTTGCTACTCCATTGCAACC
TCCCATATTATCATGGAACCTATACATCCCTCTCCTTAAAGTCCTGGAAT
ATCTTCCTCGTGGGAGTCCTTCAGAGGCATGTCTCATGAAGATATTTGTT
GCCACTGTCGAAGCAATTATTAAAAGAACCTTCCCACCTGAGTCCTCTCC
AGAAAACACTCGAAGGGCAAGGCATCTCTCGGGCATAGGATCTGCCTCTA
AAAATCTTGCTGTGGCAGAGCTTCGAACAATGGTCCATTCACTTTTTTTA
GAATCATGTGCCTCTGTGGAGCTTGCATCACGCCTACTATTTATTGTCTT
AACTGTGTGTGTTAGTCATGAAGCTCAGTCCAATGGGAGCAAGAAACCAA
GAGGTGAAGAAAATTATTTTCCTGATGAAAGCACCGAGGACTTACAGAAA
GATCTGAGAACTAGAAAGGTGAAAAGACAAGGGCCTGTAGCAGCATTTGA
TTCATATGTTTTGGCTGCTGTCTGTGCTCTTGCTTGTGAGCTTCAGTTGG
TTCCTTTGGTC
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