CF835263

Overview
NameCF835263
Unique NameCF835263
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7087 contig Csv1_Contig7087:1183..1895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835263 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.325e-61
Identity = 106/147 (72.11%), Postives = 119/147 (80.95%), Query Frame = -3
Query:  271 GRGGFVKDVYVRRMTMKTMKWAFWITGSYGSHPDNNYDPHALPVIQNINYRDMVAENVTMAARLEGIAGDPFTGICISNVTIELTNKPKKLQWNCTDIPGISSGVTPNPCELLPDHEPAKTTECNFPDNRLPVENMEVQMCSYKANY 711
            GRGG+VKD+YVR MTMKTMKWAFW+TG+YGSH DN+YDP A PVIQ INYRDMVAENV+MAARLEGI  DPFTGICISNVTI L  K KK+ W CTD+ GISSGVTP PC  LPD  P KT+ CNFP   LP++ +E+Q CSY  NY
Sbjct:  343 GRGGYVKDIYVRGMTMKTMKWAFWMTGNYGSHADNHYDPKAFPVIQGINYRDMVAENVSMAARLEGIPSDPFTGICISNVTIHLAAKAKKVPWTCTDVEGISSGVTPTPCSTLPDQGPEKTSLCNFPAESLPIDTVELQKCSYGINY 489          
The following BLAST results are available for this feature:
BLAST of CF835263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PGLR_VITVI5.325e-6172.11Probable polygalacturonase OS=Vitis vinifera GN=GS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06O23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835263 ID=CF835263; Name=CF835263; organism=Citrus sinensis; type=EST; length=713bp
TTTTTTTTTTTTTTAGGAAGAAAAAAAAAGAAATTAGATTACGATGCCAT
TTAGAAGTTCAAACTAACAAACCCAATACGAGAAAAAACCAAAATAAAAA
TTCTAATCCTTATCGCCTTTTTTGAATTAAATCGATTTTGTGGGTTAGAG
CGATAATTTAGTCGCATTACTTTATTTGCAACCAACTGTAAGTATAGGTT
TGGGGACTTATCATATCACTGCAAATAGGGACTGAAATCCCTTATACATA
CGTAACAATTCGCGTTACAAGTAATTTGCTTTGTAGGAGCACATTTGAAC
TTCCATGTTCTCAACGGGCAATCTGTTGTCAGGAAAATTACATTCCGTGG
TCTTCGCCGGTTCGTGATCTGGCAACAATTCACATGGGTTGGGAGTCACA
CCACTCGAAATCCCGGGAATATCAGTGCAGTTCCACTGAAGTTTCTTAGG
CTTGTTGGTTAGCTCAATGGTCACATTTGATATGCAAATTCCAGTAAAAG
GATCCCCAGCAATTCCTTCCAATCTAGCTGCCATTGTTACATTCTCAGCA
ACCATGTCACGATAATTGATATTCTGAATCACGGGAAGTGCATGCGGATC
ATAGTTATTGTCAGGATGAGAACCATAACTGCCTGTAATCCAAAATGCCC
ATTTCATGGTTTTCATTGTCATTCTTCTCACATATACGTCCTTCACAAAA
CCTCCTCTTCCAA
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