CF835264

Overview
NameCF835264
Unique NameCF835264
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7087 contig Csv1_Contig7087:470..1152. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835264 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 382.874 bits (982), Expect = 8.628e-106
Identity = 182/227 (80.18%), Postives = 202/227 (88.99%), Query Frame = 1
Query:    1 WKMAVWKLQSHQPFHFVPSKDAVLLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGELWWRKFRAGELKYTRPYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQDVRAEDITAID 681
            W    + L SH  F     +DAVLLASQD  +WPVI+PLPSYGRGRD   GRY+SLIFGTNLTDV+ITGDNGTIDGQG LWW++F  G+LKYTRPYLIE+MYS +IQISNLTL+NSPSWNVHPVYS ++++QGITILAPV SPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWD+YGIAYGMPTKQL+IRRLTCISP+SAVIALGSEMSGGIQDVRAEDI AI+
Sbjct:  107 WLTGSFSLTSH--FTLFLHRDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNGTIDGQGGLWWQRFHGGKLKYTRPYLIELMYSADIQISNLTLLNSPSWNVHPVYSRNILIQGITILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSAVIALGSEMSGGIQDVRAEDIVAIN 331          
BLAST of CF835264 vs. ExPASy Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 47/119 (39.50%), Postives = 72/119 (60.50%), Query Frame = 1
Query:  169 IFGTNLTDVVITGDNGTIDGQGELWWRKFRAGELKYTRPYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 525
            I  T++  +VI GD G I+GQG  WW      E K +RP  ++     N+++S LT ++SP  ++H    + V +  + I AP +SPNTDGI+  + +N  I+DC I +GDDC+A+ SG
Sbjct:  107 ILFTDIEGLVIEGD-GEINGQGSSWW------EHKGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG 218          
BLAST of CF835264 vs. ExPASy Swiss-Prot
Match: PGLR2_CHAOB (Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.719e-16
Identity = 50/124 (40.32%), Postives = 70/124 (56.45%), Query Frame = 1
Query:  184 LTDVVITGDNGTIDGQGELWWRKFRAGELKYT----------RPYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 525
            LTD  + G  G IDGQG+ WW    AG+ K            RP  I+I YS+++ +  LTL+NSP +++       V +QG+ I AP  SPNTDGI+  +     IE C I +GDDC+A+ +G
Sbjct:  145 LTDFNLMG-TGVIDGQGQQWW----AGQCKVVNGRTVCNDRNRPTAIKIDYSKSVTVKELTLMNSPEFHLVFGECEGVKIQGLKIKAPRDSPNTDGIDIFASKRFHIEKCVIGTGDDCIAIGTG 263          
BLAST of CF835264 vs. ExPASy Swiss-Prot
Match: PGLR_RHIRD (Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.343e-16
Identity = 47/130 (36.15%), Postives = 65/130 (50.00%), Query Frame = 1
Query:  292 IEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG-WDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQDVRAEDITAI 678
            + ++     Q+   T+ N+ SW +HP     +     TI+AP  SPNTDG NP+SC N  I       GDDC+AVK+G     G    +   + I  R   + P    + +GSEMSGG+ DV  ED   I
Sbjct:   25 LHLVSCHKTQLLGFTIRNAASWTIHPQGCEDLTAAASTIIAPHDSPNTDGFNPESCRNVMISGVRFSVGDDCIAVKAGKRGPDGEDDHLAETRGITVRHCLMQPGHGGLVIGSEMSGGVHDVTVEDCDMI 154          
BLAST of CF835264 vs. ExPASy Swiss-Prot
Match: PGLR2_JUNAS (Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.159e-15
Identity = 55/142 (38.73%), Postives = 73/142 (51.41%), Query Frame = 1
Query:  184 LTDVVITGDNGTIDGQGELWWR---KFRAGELKYT---RPYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTC 591
            LTD  + G  G IDGQG  WW    K   G        RP  I+I +S+++ +  LTL NSP +++       V +QGI I AP  SPNTDGI+  +     IE C I +GDDCVAV +G           +  + I+ LTC
Sbjct:  146 LTDFNLMG-TGVIDGQGNRWWSDQCKTINGRTVCNDKGRPTAIKIDFSKSVTVKELTLTNSPEFHLVFGECDGVKIQGIKIKAPRDSPNTDGIDIFASKRFEIEKCTIGTGDDCVAVGTG-----------SSNITIKDLTC 275          
BLAST of CF835264 vs. ExPASy Swiss-Prot
Match: PGLR1_PECCC (Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum GN=peh PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 55/141 (39.01%), Postives = 72/141 (51.06%), Query Frame = 1
Query:  139 DTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGEL--------WW---RKFRAGELKYTRPYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSS--VIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKS 522
            DT G    + I  T+ T+  I G  GTIDGQG +        WW      +  +LK   P LI+I  S+N  + N++LINSP  N H V+S          TI  P T+ NTDGI+P S  N  I    I +GDD VA+K+
Sbjct:  119 DTNGKGCDAFITATSTTNSGIYGP-GTIDGQGGVKLQDKKVSWWDLAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSP--NFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAHSNISTGDDNVAIKA 256          
BLAST of CF835264 vs. ExPASy Swiss-Prot
Match: ADPG2_ARATH (Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.910e-12
Identity = 36/110 (32.73%), Postives = 59/110 (53.64%), Query Frame = 1
Query:  205 GDNGTIDGQGELWWR---KFRAGELKYTRPYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 525
            GD G +DG GE WW+   K    +     P  +    S+++ + NL + N+    +     S+V V  + + AP  SPNTDGI+  +  N R+ +  I +GDDC++++SG
Sbjct:  163 GDTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLKVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSESIIGTGDDCISIESG 272          
BLAST of CF835264 vs. ExPASy Swiss-Prot
Match: PGLR2_CRYJA (Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.255e-12
Identity = 46/124 (37.10%), Postives = 66/124 (53.23%), Query Frame = 1
Query:  184 LTDVVITGDNGTIDGQGELWWRKFRAGELKYT----------RPYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 525
            LT   + G  G IDGQG+ WW    AG+ K+           RP  I+  +S  + I  L L+NSP +++       V + GI+I AP  SPNTDGI+  +  N  ++   I +GDDCVA+ +G
Sbjct:  145 LTGFTLMG-KGVIDGQGKQWW----AGQCKWVNGREICNDRDRPTAIKFDFSTGLIIQGLKLMNSPEFHLVFGNCEGVKIIGISITAPRDSPNTDGIDIFASKNFHLQKNTIGTGDDCVAIGTG 263          
BLAST of CF835264 vs. ExPASy Swiss-Prot
Match: PGLR1_ARATH (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.479e-12
Identity = 38/114 (33.33%), Postives = 66/114 (57.89%), Query Frame = 1
Query:  190 DVVITGDNGTIDGQGELWWRKFRAGELKYTR--PYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 525
            ++V+TG  GT  G+GE  W+    G+       P  ++    +N++I+ ++ +N+ ++++  V + +V +Q I + AP  SPNTDGI+  +  N  I D  I +GDDCV+V  G
Sbjct:  137 NLVLTG-TGTFHGKGEAVWKADGCGKKVQCNLPPTSLKFRNMKNVEINGISSVNAKAFHMFLVKTENVNIQNIKLTAPAESPNTDGIHLSNADNVSILDSTIATGDDCVSVGRG 249          
BLAST of CF835264 vs. ExPASy Swiss-Prot
Match: PGLR2_PECCC (Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum GN=pehA PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 53/141 (37.59%), Postives = 70/141 (49.65%), Query Frame = 1
Query:  139 DTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGEL--------WWR---KFRAGELKYTRPYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSS--VIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKS 522
            D  G    + I   + T+  I G  GTIDGQG +        WW      +  +LK   P LI+I  S+N  + N++LINSP  N H V+S          TI  P T+ NTDGI+P S  N  I    I +GDD VA+K+
Sbjct:  119 DKNGKGCDAFITAVSTTNSGIYGP-GTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSP--NFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKA 256          
The following BLAST results are available for this feature:
BLAST of CF835264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PGLR_VITVI8.628e-10680.18Probable polygalacturonase OS=Vitis vinifera GN=GS... [more]
PGLR3_ARATH1.156e-1739.50Probable polygalacturonase At3g15720 OS=Arabidopsi... [more]
PGLR2_CHAOB3.719e-1640.32Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=... [more]
PGLR_RHIRD6.343e-1636.15Polygalacturonase OS=Rhizobium radiobacter GN=pgl ... [more]
PGLR2_JUNAS9.159e-1538.73Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 ... [more]
PGLR1_PECCC8.573e-1339.01Endo-polygalacturonase OS=Pectobacterium carotovor... [more]
ADPG2_ARATH1.910e-1232.73Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN... [more]
PGLR2_CRYJA4.255e-1237.10Polygalacturonase OS=Cryptomeria japonica PE=1 SV=... [more]
PGLR1_ARATH9.479e-1233.33Exopolygalacturonase clone GBGE184 OS=Arabidopsis ... [more]
PGLR2_PECCC1.238e-1137.59Endo-polygalacturonase OS=Pectobacterium carotovor... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835264 ID=CF835264; Name=CF835264; organism=Citrus sinensis; type=EST; length=682bp
TGGAAAATGGCCGTCTGGAAGCTTCAATCTCACCAGCCATTTCACTTTGT
TCCTTCAAAGGATGCTGTTCTTCTTGCTTCCCAGGATGAGAAAGAATGGC
CTGTGATCGAGCCTTTGCCATCCTACGGTAGAGGAAGGGACACAGAAGGT
GGAAGGTATAGCAGTCTTATTTTTGGAACCAACCTCACTGATGTTGTCAT
AACAGGGGACAATGGAACTATTGATGGTCAGGGTGAGCTCTGGTGGCGAA
AATTTCGTGCGGGAGAGCTAAAGTATACCCGCCCATACCTTATTGAAATC
ATGTACTCACAGAATATTCAAATATCCAACCTCACATTGATCAATTCCCC
ATCCTGGAATGTTCATCCTGTTTATAGCAGTAGTGTCATAGTTCAAGGCA
TAACGATCTTAGCGCCGGTGACATCTCCAAACACTGATGGTATTAATCCT
GATTCTTGCACAAACACCAGAATAGAGGACTGCTACATTGTATCAGGGGA
TGACTGTGTAGCAGTTAAAAGTGGCTGGGATCAGTATGGTATTGCTTACG
GGATGCCAACAAAGCAGCTTATTATCAGACGCCTAACGTGCATTTCTCCA
TTCAGTGCAGTGATTGCACTGGGAAGTGAGATGTCCGGTGGGATTCAGGA
CGTACGGGCAGAAGATATCACAGCCATTGATT
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