CF835299

Overview
NameCF835299
Unique NameCF835299
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length231
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11532 contig Csv1_Contig11532:820..1050. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835299 vs. ExPASy Swiss-Prot
Match: AOC1_ARATH (Allene oxide cyclase 1, chloroplastic OS=Arabidopsis thaliana GN=AOC1 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.804e-11
Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = -2
Query:   75 FPFKLFYTFYLKGI-KDLPEVLLGNPVDPHPGVEPSPAAKACEPGAAIDNFTN 230
            +P KLFYTFYLKG+  DLP  L+G PV P   VEP+P AKA +P   + NFTN
Sbjct:  202 YPTKLFYTFYLKGLANDLPLELIGTPVPPSKDVEPAPEAKALKPSGVVSNFTN 254          
BLAST of CF835299 vs. ExPASy Swiss-Prot
Match: AOC2_ARATH (Allene oxide cyclase 2, chloroplastic OS=Arabidopsis thaliana GN=AOC2 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.899e-11
Identity = 31/53 (58.49%), Postives = 36/53 (67.92%), Query Frame = -2
Query:   75 FPFKLFYTFYLKGI-KDLPEVLLGNPVDPHPGVEPSPAAKACEPGAAIDNFTN 230
            +P KLFYTFYLKG+  DLP  L G PV P   +EP+P AKA EP   I N+TN
Sbjct:  201 YPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEAKALEPSGVISNYTN 253          
The following BLAST results are available for this feature:
BLAST of CF835299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AOC1_ARATH5.804e-1158.49Allene oxide cyclase 1, chloroplastic OS=Arabidops... [more]
AOC2_ARATH9.899e-1158.49Allene oxide cyclase 2, chloroplastic OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06P20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835299 ID=CF835299; Name=CF835299; organism=Citrus sinensis; type=EST; length=231bp
CCACCATGTTTGCCCCCATTATTCACTTTGAATAAAAAACAACCCAATTA
AAGATGTCCTCATATCCCTAACTAATTAGTGAAATTGTCAATGGCTGCAC
CAGGCTCACAAGCCTTAGCAGCAGGGGAGGGCTCAACACCAGGGTGCGGA
TCCACCGGATTCCCCAAAAGCACTTCTGGCAAGTCCTTAATGCCCTTCAA
ATAAAATGTGTAAAACAGCTTAAAAGGAAAC
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