CF835300

Overview
NameCF835300
Unique NameCF835300
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11532 contig Csv1_Contig11532:149..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835300 vs. ExPASy Swiss-Prot
Match: AOC3_ARATH (Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana GN=AOC3 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.289e-31
Identity = 80/167 (47.90%), Postives = 110/167 (65.87%), Query Frame = 1
Query:   76 MACSSAALRTISSASVKLANSTSLTKSS--SILVPFK--LNNPSLITQCPHL----QAATSCNFTVPKRSFTCRSQANSSDDPRPTKVQELHVYDINERDRGSPAYLRLSQKPVN-SLGDLVPFSNKLYTGDLQKRVGITAGICILIENKPEKKGDRYEATYSFYFG 549
            MA SSAA+ ++ S S+   N+ S    S  S L+ F     N  + +  P      ++ TS N  V +  F   +    +++ RP+K+QEL+VY++NE DR SPA L+L +KP    LGDLVPF+NKLYTGDL+KRVGITAG+C+LI++ PEK GDR+EA+YSFYFG
Sbjct:    1 MASSSAAM-SLESISMTTLNNLSRNHQSHRSSLLGFSRSFQNLGISSNGPDFSSRSRSTTSKNLNVTRAFFW--NWGKKTENSRPSKIQELNVYELNEGDRNSPAVLKLGKKPTELCLGDLVPFTNKLYTGDLKKRVGITAGLCVLIQHVPEKSGDRFEASYSFYFG 164          
BLAST of CF835300 vs. ExPASy Swiss-Prot
Match: AOC4_ARATH (Allene oxide cyclase 4, chloroplastic OS=Arabidopsis thaliana GN=AOC4 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.683e-31
Identity = 73/160 (45.62%), Postives = 102/160 (63.75%), Query Frame = 1
Query:   76 MACSSAALRTISSASVKLANSTSLTKSSSIL-VPFKLNNPSLITQCPHLQAATSCNFTVPKRSFTCRSQANSSDDPRPTKVQELHVYDINERDRGSPAYLRLSQKPVN-SLGDLVPFSNKLYTGDLQKRVGITAGICILIENKPEKKGDRYEATYSFYFG 549
            M  +S+A  +IS  +++  +    +  S+ L      +N  + +  P L        +     F     ++S+D  RPTK+QEL+VY+ NE DR SPA L+L +KP    LGDLVPF+NKLYTGDL KR+GITAG+C+LI++ PEKKGDR+EA+YSFYFG
Sbjct:    1 MIMASSAAASISMITLRNLSRNHQSHQSTFLGFSRSFHNQRISSNSPGLSTRARSTTSSTGGFFRTICSSSSNDYSRPTKIQELNVYEFNEGDRNSPAVLKLGKKPDQLCLGDLVPFTNKLYTGDLTKRIGITAGLCVLIQHVPEKKGDRFEASYSFYFG 160          
BLAST of CF835300 vs. ExPASy Swiss-Prot
Match: AOC2_ARATH (Allene oxide cyclase 2, chloroplastic OS=Arabidopsis thaliana GN=AOC2 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.091e-30
Identity = 77/161 (47.83%), Postives = 104/161 (64.60%), Query Frame = 1
Query:   76 MACSSAALRTISSASVKLANSTSLTKSSSILVPFK-LNNPSLITQCPHLQAATSCNFTVPKRSFTCR--SQANSSDDPRPTKVQELHVYDINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRVGITAGICILIENKPEKKGDRYEATYSFYFG 549
            MA S+ +L++IS  ++   +       SS+L   K   N  + +        +S  FT  K     R  SQ  + ++PRP+KVQEL VY+INE DR SP  L+ +   +  LGDLVPF+NKLYTGDL+KRVGITAG+C++IE+ PEKKG+R+EATYSFYFG
Sbjct:    1 MASSAVSLQSISMTTLNNLSCNQQFHRSSLLGSSKSFQNLGISSNGSDFSYPSS--FTAKKNLTASRALSQNGNIENPRPSKVQELSVYEINELDRHSPKILKNAFSLMFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEATYSFYFG 159          
BLAST of CF835300 vs. ExPASy Swiss-Prot
Match: AOC1_ARATH (Allene oxide cyclase 1, chloroplastic OS=Arabidopsis thaliana GN=AOC1 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.431e-30
Identity = 76/162 (46.91%), Postives = 107/162 (66.05%), Query Frame = 1
Query:   76 MACSSAALRTISSASVK-LANSTSLTKSSSILVPFKLNNPSLITQCPHLQAATSCNFTVPKRSFTCRSQANS---SDDPRPTKVQELHVYDINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRVGITAGICILIENKPEKKGDRYEATYSFYFG 549
            MA S+ +L++IS  ++  L+ S    +SS +       N  + +  P   + TS  FT  K+    R+ + +   +++PRP+KVQEL VY+IN+ DR SP  L+ +      LGDLVPF+NKLYTGDL+KRVGITAG+C++IE+ PEK GDR+EATYSFYFG
Sbjct:    1 MASSTISLQSISMTTLNNLSYSKQFHRSSLLGFSKSFQNFGISSNGPGSSSPTS--FTPKKKLTPTRALSQNLGNTENPRPSKVQELSVYEINDLDRHSPKILKNAFSFRFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKNGDRFEATYSFYFG 160          
The following BLAST results are available for this feature:
BLAST of CF835300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AOC3_ARATH1.289e-3147.90Allene oxide cyclase 3, chloroplastic OS=Arabidops... [more]
AOC4_ARATH1.683e-3145.63Allene oxide cyclase 4, chloroplastic OS=Arabidops... [more]
AOC2_ARATH1.091e-3047.83Allene oxide cyclase 2, chloroplastic OS=Arabidops... [more]
AOC1_ARATH2.431e-3046.91Allene oxide cyclase 1, chloroplastic OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06P20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835300 ID=CF835300; Name=CF835300; organism=Citrus sinensis; type=EST; length=569bp
CTTTAAAGTTTCTCTCCTCCCAAACAGNCAAACACTCATTCCTTTACAGA
AATTATCAGCAAAAGATTATCCCCAATGGCTTGTTCAAGCGCTGCTTTGA
GAACCATCTCTTCTGCTTCTGTCAAGCTAGCCAATTCAACATCACTAACC
AAATCATCATCAATTTTAGTACCATTTAAGCTGAATAATCCTTCTCTAAT
CACTCAATGCCCCCACCTTCAAGCCGCCACAAGCTGCAACTTCACAGTAC
CCAAAAGATCTTTCACTTGCAGAAGCCAAGCTAACTCATCAGATGATCCC
AGACCCACCAAGGTTCAAGAACTTCATGTGTATGATATCAACGAGCGAGA
TCGTGGCAGTCCAGCTTATCTTCGCTTGAGCCAGAAACCTGTGAATTCAC
TTGGTGATCTTGTCCCTTTTAGCAACAAATTATATACTGGAGACCTGCAA
AAGAGGGTGGGAATAACAGCGGGTATATGCATTTTGATCGAAAACAAACC
AGAAAAGAAAGGTGACCGATATGAAGCAACTTACAGCTTCTACTTTGGGA
GACTATGGTCACATAACTG
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