CF835313

Overview
NameCF835313
Unique NameCF835313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length457
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835313_ssr15 microsatellite CF835313_ssr15:15..29. BLAST: Citrus ESTs to Prunus persica proteins V1
CF835313_ssr135 microsatellite CF835313_ssr135:135..146. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13513 contig Csv1_Contig13513:19..475. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835313 vs. ExPASy Swiss-Prot
Match: RS30_ARATH (40S ribosomal protein S30 OS=Arabidopsis thaliana GN=RPS30A PE=1 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 7.002e-22
Identity = 50/62 (80.65%), Postives = 52/62 (83.87%), Query Frame = 3
Query:   60 MGKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 245
            MGKVHGSLARAGKVRGQTP          PRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Sbjct:    1 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSSEK 62          
BLAST of CF835313 vs. ExPASy Swiss-Prot
Match: RS30_RAT (40S ribosomal protein S30 OS=Rattus norvegicus GN=Fau PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.197e-13
Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 3
Query:   66 KVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 239
            KVHGSLARAGKVRGQTP            GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct:    1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58          
BLAST of CF835313 vs. ExPASy Swiss-Prot
Match: RS30_PONAB (40S ribosomal protein S30 OS=Pongo abelii GN=FAU PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.197e-13
Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 3
Query:   66 KVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 239
            KVHGSLARAGKVRGQTP            GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct:    1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58          
BLAST of CF835313 vs. ExPASy Swiss-Prot
Match: RS30_PIG (40S ribosomal protein S30 OS=Sus scrofa GN=FAU PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.197e-13
Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 3
Query:   66 KVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 239
            KVHGSLARAGKVRGQTP            GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct:    1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58          
BLAST of CF835313 vs. ExPASy Swiss-Prot
Match: RS30_MUSSI (40S ribosomal protein S30 OS=Mus spicilegus GN=Fau PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.197e-13
Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 3
Query:   66 KVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 239
            KVHGSLARAGKVRGQTP            GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct:    1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58          
BLAST of CF835313 vs. ExPASy Swiss-Prot
Match: RS30_MOUSE (40S ribosomal protein S30 OS=Mus musculus GN=Fau PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.197e-13
Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 3
Query:   66 KVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 239
            KVHGSLARAGKVRGQTP            GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct:    1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58          
BLAST of CF835313 vs. ExPASy Swiss-Prot
Match: RS30_HUMAN (40S ribosomal protein S30 OS=Homo sapiens GN=FAU PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.197e-13
Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 3
Query:   66 KVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 239
            KVHGSLARAGKVRGQTP            GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct:    1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58          
BLAST of CF835313 vs. ExPASy Swiss-Prot
Match: RS30_CRIGR (40S ribosomal protein S30 OS=Cricetulus griseus GN=FAU PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.197e-13
Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 3
Query:   66 KVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 239
            KVHGSLARAGKVRGQTP            GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct:    1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58          
BLAST of CF835313 vs. ExPASy Swiss-Prot
Match: RS30_BOVIN (40S ribosomal protein S30 OS=Bos taurus GN=FAU PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.197e-13
Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 3
Query:   66 KVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 239
            KVHGSLARAGKVRGQTP            GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct:    1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58          
BLAST of CF835313 vs. ExPASy Swiss-Prot
Match: RS30_ORYLA (40S ribosomal protein S30 OS=Oryzias latipes GN=fau PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.851e-12
Identity = 35/58 (60.34%), Postives = 40/58 (68.97%), Query Frame = 3
Query:   66 KVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 239
            KVHGSLARAGKVRGQTP            GRA +R+QYNRRFV  V  FGKK+G N++
Sbjct:    1 KVHGSLARAGKVRGQTPNVDKHEEKEEEDGRAKRRIQYNRRFVNVVPTFGKKKGANAN 58          
The following BLAST results are available for this feature:
BLAST of CF835313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RS30_ARATH7.002e-2280.6540S ribosomal protein S30 OS=Arabidopsis thaliana ... [more]
RS30_RAT1.197e-1363.7940S ribosomal protein S30 OS=Rattus norvegicus GN=... [more]
RS30_PONAB1.197e-1363.7940S ribosomal protein S30 OS=Pongo abelii GN=FAU P... [more]
RS30_PIG1.197e-1363.7940S ribosomal protein S30 OS=Sus scrofa GN=FAU PE=... [more]
RS30_MUSSI1.197e-1363.7940S ribosomal protein S30 OS=Mus spicilegus GN=Fau... [more]
RS30_MOUSE1.197e-1363.7940S ribosomal protein S30 OS=Mus musculus GN=Fau P... [more]
RS30_HUMAN1.197e-1363.7940S ribosomal protein S30 OS=Homo sapiens GN=FAU P... [more]
RS30_CRIGR1.197e-1363.7940S ribosomal protein S30 OS=Cricetulus griseus GN... [more]
RS30_BOVIN1.197e-1363.7940S ribosomal protein S30 OS=Bos taurus GN=FAU PE=... [more]
RS30_ORYLA3.851e-1260.3440S ribosomal protein S30 OS=Oryzias latipes GN=fa... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01A13_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01A13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835313 ID=CF835313|Name=CF835313|organism=Citrus sinensis|type=EST|length=457bp
GAGTCTCACAGCATCAGCAGCAGCAGCAGCGGCCAACAAGACTACTCAAA
CGATCAGCTATGGGTAAGGTTCACGGATCTTTGGCTCGTGCCGGTAAGGT
GAGAGGCCAAACTCCTAAAGTTGCTAAACAGGATAAGAAGAAGAAGCCAC
GGGGCCGCGCCCACAAGCGCATGCAATACAACCGCCGCTTCGTCACCGCA
GTGGTTGGTTTTGGAAAGAAAAGAGGACCCAACTCATCTGAGAAGTAAAA
AAATGCTTGAGAGGATGAATGAAGAAGGGTTAGATAGGTGAAAAAGCACT
TGGTGTTTTTGATAATTTCTCTTATGTTGTTTTTAAAGACCTTATTATGG
TATTCTGTTACTAATGTTATGTTTTGAGATTTTGTCTCTCTTAAACTTGT
GATCATCATTTTGTTAGTAGAGATTATGTGATTTTCTTTTCAAAAAAAAA
AAAAAAA
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