CF835316

Overview
NameCF835316
Unique NameCF835316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10290 contig Csv1_Contig10290:301..1127. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835316 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.840e-14
Identity = 69/222 (31.08%), Postives = 108/222 (48.65%), Query Frame = -2
Query:  200 MKTSLVTTLSFL----ILALATKPQLGASES--EPILDVYGNQVDSSHRYYLVSALWGVKTGGGISADKGK-NGQ--CPTDVIQLSPKDKRGKNLGLLPYD-NSTIVRESTNIKLKFSRVSSLQQCNKDSLWKVDNDNASLGKQFITIGEGK------TCQNFFKLEKVSASIFDMKIALDIPCLYKIVHCSTLVNGSCDTLCKDVGV-SNVDGVQRLVVVD 814
            MK   + +LSF     +LA A  P L A++S   P+LD+ G ++ +   YY+V  L     GGG++      NG   CP  V+Q   +    + L   P +    +VR ST++ + FS     +  +  ++W++D  + S G+ F+TIG  K      T  ++FK+E+   S F           YK+V C T V GSC   C DVG+  +  G +RL + D
Sbjct:    1 MKELTMLSLSFFFVSALLAAAANPLLSAADSAPNPVLDIDGEKLRTGTNYYIVPVLRD--HGGGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPCRWTSS-TVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCGSGF-----------YKLVFCPT-VCGSCKVKCGDVGIYIDQKGRRRLALSD 207          
BLAST of CF835316 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.035e-12
Identity = 57/218 (26.15%), Postives = 106/218 (48.62%), Query Frame = -2
Query:  191 MKTSLVTTLSFLILALATKPQ---LGASESEPILDVYGNQVDSSHRYYLVSALWGVKTGGGISADKGKNGQCPTDVIQLSPKDKRGKNLGLLPYDN-STIVRESTNIKLKFSRVSSLQQCNKDSLWKVDNDNASLGKQFITIGEGK------TCQNFFKLEKVSASIFDMKIALDIPCLYKIVHCSTLVNGSCDTLCKDVGVSNVDGVQRLVVVDDND 814
            MKT+  T +  L+ A  +K     +  + + P+LD  G+++ +  +YY++S++ G   GGG++  +     CP  V+Q       G  +     D+   +VR ST++ ++F  +   + C+  ++W++DN + S GK ++T    K      T  ++FK+EK                 YK   C ++ + SC TLC D+G  + D  Q  + + DN+
Sbjct:    1 MKTA--TAVVLLLFAFTSKSYFFGVANAANSPVLDTDGDELQTGVQYYVLSSISGA-GGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPIRD-RLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGV------------LGYKFRFCPSVCD-SCTTLCSDIGRHSDDDGQIRLALSDNE 201          
BLAST of CF835316 vs. ExPASy Swiss-Prot
Match: SPOR1_IPOBA (Sporamin A OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.013e-11
Identity = 49/144 (34.03%), Postives = 77/144 (53.47%), Query Frame = -2
Query:  329 ASESEPILDVYGNQVDSSHRYYLVSALWGVKTGGGISADKGKNGQCPTDVIQLSPKD-KRGKNLGLLPY---DNSTIVRESTNIKLKFSRVSSLQQCNKDSLWKVDNDNASLGKQFITIGE-GKTCQNFFKLEKVSASIFDMKI 745
            AS   P+LD+ G++V +   YY+VSA+WG   GG   A      +C TDVI +SP D   G  + + P      ST+V  ST    +F+ +++ + C  +  W + +D+AS G+ F+  GE      N FK+E V A++   K+
Sbjct:   37 ASSETPVLDINGDEVRAGGNYYMVSAIWGAGGGGLRLAHLDMMSKCATDVI-VSPNDLDNGDPITITPATADPESTVVMASTYQTFRFN-IATNKLCVNNVNWGIQHDSAS-GQYFLKAGEFVSDNSNQFKIELVDANLNSYKL 177          
The following BLAST results are available for this feature:
BLAST of CF835316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MIRA_RICDU2.840e-1431.08Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
ASP_THECC2.035e-1226.1521 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
SPOR1_IPOBA5.013e-1134.03Sporamin A OS=Ipomoea batatas PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01A15_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835316 ID=CF835316|Name=CF835316|organism=Citrus sinensis|type=EST|length=827bp
TTTTTTTTTTTACAGCGAAAGCATCATAGGCTATTTTATTTATGCTTAAC
CATAGAGATTAAAGAGTACTAGCCTGGTCCATTATTTAGAATAATACAGC
CTGTTGGCTTATTCATTACAGAGACGGAAATAACATAGATCTTCCACTAT
CAGCTGGAAATAACACAACAGGCAAAGGCAGATTTGGCTGATCATTATCA
TCAACCACAACTAGACGTTGGACGCCATCCACATTAGAAACGCCAACGTC
TTTGCAGAGTGTATCGCAAGAACCATTAACAAGTGTTGAACAATGAACAA
TTTTGTATAGACAGGGAATGTCTAGTGCTATTTTCATATCAAATATTGAT
GCACTAACTTTCTCAAGTTTAAAAAAATTTTGACACGTTTTACCTTCACC
GATTGTTATAAACTGCTTTCCTAATGAAGCGTTATCGTTGTCAACTTTCC
ACAACGAATCTTTGTTACACTGCTGAAGAGAAGAAACTCTTGAGAATTTC
AATTTAATATTAGTGGATTCCCGGACAATTGTGGAATTGTCATACGGAAG
TAAACCTAAATTCTTTCCCCTTTTGTCCTTAGGACTTAATTGGATAACAT
CCGTTGGACACTGTCCATTTTTGCCTTTGTCCGCGCTAATTCCACCGCCG
GTTTTAACTCCCCAGAGTGCTGAGACAAGATAATACCTGTGGCTGGAGTC
CACCTGGTTGCCATAGACATCTAAGATAGGTTCAGATTCTGAGGCGCCCA
ACTGAGGTTTTGTGGCCAAAGCAAGTATAAGGAAGGAGAGTGTTGTTACT
AATGAAGTCTTCATTTGTTTTTTTTTT
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