CF835329
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1) HSP 1 Score: 254.603 bits (649), Expect = 3.993e-67 Identity = 130/176 (73.86%), Postives = 152/176 (86.36%), Query Frame = 2 Query: 200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEVSN 727 MAREKIQIKKIDN+TARQVTFSKRRRG+FKKAEELSVLCDADVALIIFS+TGKLF+YSSSSMK+ILE+ +HSKNLE++DQPS+ELQL+EN+NYS L KE +EKSH LRQMRGEE+ GL++EELQ+LERSLE GL RV N+LQ++G LMEENE+LRQQV E+SN Sbjct: 1 MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSSSMKQILERRDLHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEENEKLRQQVMEISN 176
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1) HSP 1 Score: 235.343 bits (599), Expect = 2.507e-61 Identity = 118/175 (67.43%), Postives = 148/175 (84.57%), Query Frame = 2 Query: 200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEVS 724 MAREKIQI+KIDNATARQVTFSKRRRG+FKKAEELSVLCDADVALIIFS+TGKLFE+ SSSMKE+LE+H + SKNLE++DQPS+ELQL+EN++++ + KE A+KSH LRQMRGEE+ GL +EELQ+LE++LE GL RV +ELQ++G LM+EN+RLRQQ +++ Sbjct: 1 MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSSSMKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDIEELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDENKRLRQQGTQLT 175
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1) HSP 1 Score: 194.897 bits (494), Expect = 3.755e-49 Identity = 102/177 (57.63%), Postives = 136/177 (76.84%), Query Frame = 2 Query: 200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEVSNA 730 MARE+ +IK+I++A ARQVTFSKRRRG+FKKAEELSVLCDADVALI+FS+TGKL ++SSSM EI++K+ HS NL + +QPS++L LE++ Y+ L ++ AE S LRQMRGEE+ GLS++ELQ+LE++LE GL RV +ELQR+ L EEN +LR QV+++S A Sbjct: 1 MARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASSSMNEIIDKYNTHSNNLGKAEQPSLDLN-LEHSKYAHLNEQLAEASLRLRQMRGEELEGLSIDELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENMQLRNQVSQISPA 176
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2) HSP 1 Score: 181.415 bits (459), Expect = 4.296e-45 Identity = 101/199 (50.75%), Postives = 136/199 (68.34%), Query Frame = 2 Query: 200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVD-QPSVELQL---------------------LENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEVSNA 730 MARE+ +I++I++A ARQVTFSKRRRG+FKKAEEL+VLCDADVAL++FS+TGKL +++SS+M EI++K+ HSKNL + D QPS++L LE++ S L ++ AE S LRQMRGEE+ GLS+EELQ++E++LE GL RV +ELQR+G L EEN RLR Q+ +V A Sbjct: 1 MARERREIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFASSNMNEIIDKYTTHSKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNEQLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRKGIQLAEENMRLRDQMPQVPTA 199
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2) HSP 1 Score: 177.178 bits (448), Expect = 8.103e-44 Identity = 93/185 (50.27%), Postives = 135/185 (72.97%), Query Frame = 2 Query: 158 GRSQQ*QLASKGKEMAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQV 712 GR + A+ GK RE+I I++IDN ARQVTFSKRRRG+FKKAEELS+LCDA+V L++FSATGKLF+++S+SM++I++++ HSK L+R + ++LQ +++ + L +E AE S LRQMRGEE+H L++E+LQ+LE+SLE GLG V + L+R+ L+EEN RL++Q+ Sbjct: 9 GRGEGEGRAATGK---RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTSMEQIIDRYNSHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEENLRLKEQL 190
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2) HSP 1 Score: 140.584 bits (353), Expect = 8.404e-33 Identity = 74/173 (42.77%), Postives = 116/173 (67.05%), Query Frame = 2 Query: 200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFK-EAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVA 715 M R KI I++IDN+T+RQVTFSKRR GIFKKA+EL++LCDA+V L+IFS+TG+L+EYSS+SMK +++++ + V P+ EL+ + S+ + +++H RQ+ GE++ GL+++ELQ LE LE+ L V +EL R+G L+ +EN L ++++ Sbjct: 1 MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSSTSMKSVIDRYGKSKDEQQAVANPNSELKFWQREAASLRQQLHNLQENH--RQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMELYKKIS 171
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.136e-29 Identity = 74/178 (41.57%), Postives = 108/178 (60.67%), Query Frame = 2 Query: 200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSS-MKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLL----RQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAE 718 M R ++Q+K+I+N RQVTFSKRR G+ KKA E+SVLCDA+VAL++FS GKLFEYS+ S M++ILE++ +S ++ P ++ N N+SM + K LL R GE++ +S +ELQ LE+ L+ L + NELQR+ K + E+N L +Q+ E Sbjct: 1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDV----NTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSSKELQNLEQQLDTALKHIRSRKNQLMHDSINELQRKEKAIQEQNSMLSKQIKE 174
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3) HSP 1 Score: 129.413 bits (324), Expect = 1.937e-29 Identity = 75/181 (41.44%), Postives = 108/181 (59.67%), Query Frame = 2 Query: 200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSS-MKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLL----RQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEVSN 727 M R ++++K+I+N RQVTFSKRR G+ KKA+E+SVLCDA+V+LI+FS GKLFEYSS S M+++LE++ +S ++ P + N+SM + K LL R GEE+ +SL++LQ LE+ LE L + N LQR+ K + EEN L +Q+ E N Sbjct: 1 MGRGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSESCMEKVLERYERYSYAERQLIAPDSHVN--AQTNWSMEYSRLKAKIELLERNQRHYLGEELEPMSLKDLQNLEQQLETALKHIRSRKNQLMNESLNHLQRKEKEIQEENSMLTKQIKEREN 179
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2) HSP 1 Score: 128.642 bits (322), Expect = 3.305e-29 Identity = 73/178 (41.01%), Postives = 108/178 (60.67%), Query Frame = 2 Query: 200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSS-MKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLL----RQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAE 718 M R ++Q+K+I+N RQVTFSKRR G+ KKA E+SVLCDA+VAL++FS GKLFEYS+ S M++ILE++ +S ++ P ++ N N+SM + K LL R GE++ +S +ELQ LE+ L+ L + NELQ++ K + E+N L +Q+ E Sbjct: 1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDV----NTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRTRKNQLMYESINELQKKEKAIQEQNSMLSKQIKE 174
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 3.305e-29 Identity = 69/176 (39.20%), Postives = 117/176 (66.48%), Query Frame = 2 Query: 200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKE--AAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEV 721 M R KI I++ID++T+RQVTFSKRR+G+ KKA+EL++LCDA+V LIIFS+TGKL++++SSSMK +++++ +++ P+ E++ + ++L +E A +++H RQM GE+++GLS+ EL LE +E+ L + EL ++ L+ +EN L ++V + Sbjct: 1 MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASSSMKSVIDRYNKSKIEQQQLLNPASEVKFWQ-REAAVLRQELHALQENH--RQMMGEQLNGLSVNELNSLENQIEISLRGIRMRKEQLLTQEIQELSQKRNLIHQENLDLSRKVQRI 173 The following BLAST results are available for this feature:
BLAST of CF835329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 122
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835329 ID=CF835329; Name=CF835329; organism=Citrus sinensis; type=EST; length=732bpback to top |