CF835336

Overview
NameCF835336
Unique NameCF835336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length457
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2457 contig Csv1_Contig2457:81..537. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835336 vs. ExPASy Swiss-Prot
Match: RL38_ARATH (60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 5.890e-29
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 2
Query:    2 QIHAIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 199
            QIH IKDFLLTARRKDARSVKIKRS+D+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQDL
Sbjct:    4 QIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSLPPGLSVQDL 69          
BLAST of CF835336 vs. ExPASy Swiss-Prot
Match: RL38_SOLLC (60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 7.200e-27
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 2
Query:    2 QIHAIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 199
            QIH IKDFLLTARRKDAR+VKIK+++D+VKFKVRCSKYLYTLCV D EKADKLKQSLPPGLSVQDL
Sbjct:    4 QIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSLPPGLSVQDL 69          
BLAST of CF835336 vs. ExPASy Swiss-Prot
Match: RL38_BRABE (60S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 9.731e-24
Identity = 52/66 (78.79%), Postives = 61/66 (92.42%), Query Frame = 2
Query:    2 QIHAIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 199
            QIH IKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKADKLKQSLPPGL+V++L
Sbjct:    4 QIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSLPPGLAVKEL 69          
BLAST of CF835336 vs. ExPASy Swiss-Prot
Match: RL38_MOUSE (60S ribosomal protein L38 OS=Mus musculus GN=Rpl38 PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 2.397e-22
Identity = 50/66 (75.76%), Postives = 60/66 (90.91%), Query Frame = 2
Query:    2 QIHAIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 199
            +I  IKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V+DL
Sbjct:    4 KIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKDL 69          
BLAST of CF835336 vs. ExPASy Swiss-Prot
Match: RL38_RAT (60S ribosomal protein L38 OS=Rattus norvegicus GN=Rpl38 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 6.974e-22
Identity = 49/66 (74.24%), Postives = 60/66 (90.91%), Query Frame = 2
Query:    2 QIHAIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 199
            +I  IKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++L
Sbjct:    4 KIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEL 69          
BLAST of CF835336 vs. ExPASy Swiss-Prot
Match: RL38_HUMAN (60S ribosomal protein L38 OS=Homo sapiens GN=RPL38 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 6.974e-22
Identity = 49/66 (74.24%), Postives = 60/66 (90.91%), Query Frame = 2
Query:    2 QIHAIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 199
            +I  IKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++L
Sbjct:    4 KIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEL 69          
BLAST of CF835336 vs. ExPASy Swiss-Prot
Match: RL38_BOVIN (60S ribosomal protein L38 OS=Bos taurus GN=RPL38 PE=3 SV=4)

HSP 1 Score: 102.834 bits (255), Expect = 6.974e-22
Identity = 49/66 (74.24%), Postives = 60/66 (90.91%), Query Frame = 2
Query:    2 QIHAIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 199
            +I  IKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++L
Sbjct:    4 KIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEL 69          
BLAST of CF835336 vs. ExPASy Swiss-Prot
Match: RL38_MACFA (60S ribosomal protein L38 OS=Macaca fascicularis GN=RPL38 PE=3 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 2.029e-21
Identity = 48/65 (73.85%), Postives = 59/65 (90.77%), Query Frame = 2
Query:    2 QIHAIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQD 196
            +I  IKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++
Sbjct:    4 KIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKE 68          
BLAST of CF835336 vs. ExPASy Swiss-Prot
Match: RL38_LYSTE (60S ribosomal protein L38 OS=Lysiphlebus testaceipes GN=RpL38 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 8.525e-20
Identity = 45/66 (68.18%), Postives = 58/66 (87.88%), Query Frame = 2
Query:    2 QIHAIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 199
            +I  IKDFL+TARRKDA+SVKIK++ + VKFKVRCS++LYTL + D EKA+KLKQSLPPGL V+++
Sbjct:    4 EIKEIKDFLVTARRKDAKSVKIKKNAENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 69          
BLAST of CF835336 vs. ExPASy Swiss-Prot
Match: RL38_ORNPR (60S ribosomal protein L38 OS=Ornithodoros parkeri GN=RpL38 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.113e-19
Identity = 48/67 (71.64%), Postives = 58/67 (86.57%), Query Frame = 2
Query:    2 QIHAIKDFLLTARRKDARSVKIKRSRD-VVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 199
            Q+  IKDFLLTARRKDA+SV+IK++ D V KFKVRCSKYLYT+ V + EKA+KLKQSLPPGL V++L
Sbjct:    4 QLKEIKDFLLTARRKDAKSVRIKKNPDNVTKFKVRCSKYLYTIVVKEKEKAEKLKQSLPPGLQVKEL 70          
The following BLAST results are available for this feature:
BLAST of CF835336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL38_ARATH5.890e-2992.4260S ribosomal protein L38 OS=Arabidopsis thaliana ... [more]
RL38_SOLLC7.200e-2787.8860S ribosomal protein L38 OS=Solanum lycopersicum ... [more]
RL38_BRABE9.731e-2478.7960S ribosomal protein L38 OS=Branchiostoma belcher... [more]
RL38_MOUSE2.397e-2275.7660S ribosomal protein L38 OS=Mus musculus GN=Rpl38... [more]
RL38_RAT6.974e-2274.2460S ribosomal protein L38 OS=Rattus norvegicus GN=... [more]
RL38_HUMAN6.974e-2274.2460S ribosomal protein L38 OS=Homo sapiens GN=RPL38... [more]
RL38_BOVIN6.974e-2274.2460S ribosomal protein L38 OS=Bos taurus GN=RPL38 P... [more]
RL38_MACFA2.029e-2173.8560S ribosomal protein L38 OS=Macaca fascicularis G... [more]
RL38_LYSTE8.525e-2068.1860S ribosomal protein L38 OS=Lysiphlebus testaceip... [more]
RL38_ORNPR1.113e-1971.6460S ribosomal protein L38 OS=Ornithodoros parkeri ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01B04_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835336 ID=CF835336; Name=CF835336; organism=Citrus sinensis; type=EST; length=457bp
GCAGATACACGCGATCAAGGATTTCCTTCTTACCGCCAGAAGGAAGGATG
CACGCTCTGTGAAAATCAAGAGAAGCAGAGATGTTGTCAAGTTCAAGGTT
CGCTGCTCTAAGTACCTTTACACCCTTTGTGTGTTCGACTCAGAGAAGGC
TGACAAGTTGAAGCAGTCTCTTCCTCCAGGTTTGAGCGTCCAAGACCTGT
GAGTGTATGCGAGCTTGTCTTAATTTACTAGGTGATGAGAGCTGCTTTTT
TACATTTCATGCTGTTTTCTCATAGTAGAAATATTGTGTGGATTTGAGCG
TATTTGATAATTGTTATTGTTAGAGGATGCGGATCTTTTTGCCAGTTGAT
TTATGGACGTTGAAACTTGGTTTGCACAATTGCAACTTTTTGCCTACTAC
ATTATCTTCAGTTTAATTTCTGGATGAAATCTTGACAAATCAAAAAAAAA
AAAAAAA
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