CF835342

Overview
NameCF835342
Unique NameCF835342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3190 contig Csv1_Contig3190:1..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835342 vs. ExPASy Swiss-Prot
Match: PAB2_SCHPO (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe GN=pab2 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.832e-30
Identity = 72/118 (61.02%), Postives = 80/118 (67.80%), Query Frame = 2 
Query:  272 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPR-----RFNPYMGYRGRRPYVPPY 607
            KE  D++SV+VGNVDY+ TPEE+Q HF SCG+VNRVTIL DKF G PKGFAY+EF E   V  AL LN S LH R LKV PKRTNVPGM + R R     R     GYRGR     PY
Sbjct:   49 KESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGRGRGRGRGGYRGRARGFAPY 166
[Close]
BLAST of CF835342 vs. ExPASy Swiss-Prot
Match: PABP2_MOUSE (Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 2.841e-28
Identity = 68/132 (51.52%), Postives = 88/132 (66.67%), Query Frame = 2 
Query:  203 QAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 586
            Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  136 QNEVEKQMNMSPPPGNAGPVIMSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIS--TTDRGFPRSRYRAR 265
[Close]
BLAST of CF835342 vs. ExPASy Swiss-Prot
Match: PAB2A_XENLA (Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-A PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.841e-28
Identity = 68/132 (51.52%), Postives = 88/132 (66.67%), Query Frame = 2 
Query:  203 QAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 586
            Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  131 QNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIS--TTDRGFPRARYRAR 260
[Close]
BLAST of CF835342 vs. ExPASy Swiss-Prot
Match: PABP2_HUMAN (Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 3.711e-28
Identity = 68/132 (51.52%), Postives = 88/132 (66.67%), Query Frame = 2 
Query:  203 QAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 586
            Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  140 QNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIS--TTDRGFPRARYRAR 269
[Close]
BLAST of CF835342 vs. ExPASy Swiss-Prot
Match: PABP2_BOVIN (Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 3.711e-28
Identity = 68/132 (51.52%), Postives = 88/132 (66.67%), Query Frame = 2 
Query:  203 QAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 586
            Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  140 QNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIS--TTDRGFPRARYRAR 269
[Close]
BLAST of CF835342 vs. ExPASy Swiss-Prot
Match: PAB2B_XENLA (Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-B PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.711e-28
Identity = 68/132 (51.52%), Postives = 88/132 (66.67%), Query Frame = 2 
Query:  203 QAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 586
            Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  130 QNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIS--TTDRGFPRARYRAR 259
[Close]
BLAST of CF835342 vs. ExPASy Swiss-Prot
Match: PABP2_XENTR (Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.080e-27
Identity = 67/132 (50.76%), Postives = 88/132 (66.67%), Query Frame = 2 
Query:  203 QAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 586
            Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DK+ G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  131 QNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIS--TTDRGFPRARYRAR 260
[Close]
BLAST of CF835342 vs. ExPASy Swiss-Prot
Match: PABP2_DROME (Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.924e-26
Identity = 68/160 (42.50%), Postives = 90/160 (56.25%), Query Frame = 2 
Query:  203 QAKVEKEM--GAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRP----------------------RRFNPYMGYRGRRPYVPPY 607
            Q++V+K+M  G+    A V  +   K+E D+RSV+VGNVDY  + EE++ HF  CGT+NRVTIL +K  G PKGFAY+EF   + V+ AL +NE+   GRQ+KV+ KRTN PG+                           R     MGYRGR  Y  PY
Sbjct:   65 QSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRGARRAMGYRGRANYYAPY 224
[Close]
BLAST of CF835342 vs. ExPASy Swiss-Prot
Match: PABP2_DROPS (Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura pseudoobscura GN=Pabp2 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.840e-25
Identity = 68/161 (42.24%), Postives = 91/161 (56.52%), Query Frame = 2 
Query:  203 QAKVEKEM--GAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMK--------QYRPR---------------RFNPYMGYRGRRPYVPPY 607
            Q++V+K+M  G+    A V  +   K+E D+RSV+VGNVDY  + EE++ HF  CGT+NRVTIL +K  G PKGFAY+EF   + V+ AL +NE+   GRQ+KV+ KRTN PG+          +R R                     GYRGR  Y  PY
Sbjct:   65 QSEVDKQMAGGSTTGLAAVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARASRACCHSTFRGARRAIRGYRGRANYYAPY 225
[Close]
BLAST of CF835342 vs. ExPASy Swiss-Prot
Match: EPA2B_XENLA (Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis GN=epabp2-B PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.015e-25
Identity = 59/119 (49.58%), Postives = 82/119 (68.91%), Query Frame = 2 
Query:  272 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ-----YRPR-RFNPYMGYRGRRPYVPPY 607
            K+E D RSV+VGNVDY  T ++++ HF SCG++NR+TIL DKF G PKG+AY+EF E ++V  A+ ++E+   GR +KVLPKRTN+PG+       +R R R N     RG+RP   P+
Sbjct:   87 KKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRPRGRPF 205
The following BLAST results are available for this feature:
BLAST of CF835342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PAB2_SCHPO8.832e-3061.02Polyadenylate-binding protein 2 OS=Schizosaccharom... [more]
PABP2_MOUSE2.841e-2851.52Polyadenylate-binding protein 2 OS=Mus musculus GN... [more]
PAB2A_XENLA2.841e-2851.52Polyadenylate-binding protein 2-A OS=Xenopus laevi... [more]
PABP2_HUMAN3.711e-2851.52Polyadenylate-binding protein 2 OS=Homo sapiens GN... [more]
PABP2_BOVIN3.711e-2851.52Polyadenylate-binding protein 2 OS=Bos taurus GN=P... [more]
PAB2B_XENLA3.711e-2851.52Polyadenylate-binding protein 2-B OS=Xenopus laevi... [more]
PABP2_XENTR1.080e-2750.76Polyadenylate-binding protein 2 OS=Xenopus tropica... [more]
PABP2_DROME5.924e-2642.50Polyadenylate-binding protein 2 OS=Drosophila mela... [more]
PABP2_DROPS3.840e-2542.24Polyadenylate-binding protein 2 OS=Drosophila pseu... [more]
EPA2B_XENLA5.015e-2549.58Embryonic polyadenylate-binding protein 2-B OS=Xen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01B08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835342 ID=CF835342; Name=CF835342; organism=Citrus sinensis; type=EST; length=737bp
CCGGAATACAGCACGATAGAGAATGGAGGAAGAAGAGCACGAGGTTTACG
GAGGCGAAATCCCTGACGTGGAAGGTGACATGGACGCTCACAATACTGAC
GTCGACATGTCGGCGGCCGATGACGACGCCGTCAAGGAGCTGGATGAGAT
GAAGAAGCGGTTGAAGGAGATGGAGGAGGAAGCTGCTGCTCTTCGTGAGA
TGCAAGCTAAGGTCGAGAAAGAGATGGGCGCTGCTCAAGATCCTGCTAAT
GTGGCTGCTAATCAAGCAAGCAAAGAAGAGGCAGATTCACGATCAGTCTT
TGTTGGCAATGTAGATTATGCATGCACTCCTGAAGAAGTGCAGCAACATT
TCCAATCCTGTGGTACTGTAAACAGGGTAACTATTCTGACAGACAAGTTT
GGCCAGCCAAAGGGTTTTGCTTATGTGGAATTCCTTGAAATAGATGCTGT
TCAAGAGGCTCTCCAGTTGAATGAGTCTGAATTACATGGCCGTCAACTGA
AGGTTTTACCTAAGAGGACAAATGTCCCTGGTATGAAGCAGTATCGTCCA
AGGCGTTTCAATCCTTACATGGGGTACCGAGGCAGGAGGCCCTATGTACC
TCCTTATTTCTATTCACCTTATGGATATGGGAAGGTTCCGAGGTTCAGAA
GGCCAATGAGGTACATGCCCTACTACTAGCAGATTGTGCTCCTGTTGAAG
ATGGTGACATTTGTGGATCATCCATAAACTGAAAAAT
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