CF835343

Overview
NameCF835343
Unique NameCF835343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835343_ssr349 microsatellite CF835343_ssr349:349..360. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11415 contig Csv1_Contig11415:377..1178. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835343 vs. ExPASy Swiss-Prot
Match: ICR3_ARATH (Interactor of constitutive active ROPs 3 OS=Arabidopsis thaliana GN=ICR3 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.258e-29
Identity = 78/167 (46.71%), Postives = 95/167 (56.89%), Query Frame = -3
Query:  300 DKETELQNISEENEMLKLEVSKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSXXXXXXXXXXXXXXXXXXXXVLWKKPQK 800
            DKETELQ +S+ENE LK ++ K E D                   ++A +KLG+ MEEADKS+++A R+ EQLEA Q++N E E ELR+LKVQS+QWRKAAEAA +MLS GNNGK  E       NYN        PYS                    VLWKKPQK
Sbjct:  427 DKETELQIVSDENETLKSDIHKSETDV------------------QDAFLKLGIAMEEADKSSKKAVRVTEQLEATQASNSEMETELRKLKVQSNQWRKAAEAATAMLSAGNNGKFAE-------NYNQTNS----PYSEDIDDELTKKKNGNVLKKIGVLWKKPQK 564          
BLAST of CF835343 vs. ExPASy Swiss-Prot
Match: ICR2_ARATH (Interactor of constitutive active ROPs 2, chloroplastic OS=Arabidopsis thaliana GN=ICR2 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.873e-24
Identity = 69/130 (53.08%), Postives = 82/130 (63.08%), Query Frame = -3
Query:  426 DKETELQNISEENEMLKLEVSKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLSTGN-----NGKCMERSGSIDS 800
            DKE ELQ++  + E L+      E++T     N A +         EAL KLG L EEADKS +RA    EQL AAQ  N E EAELRRLKVQ DQWRKAAEAAA+MLS GN     NGK +ER+GS++S
Sbjct:  425 DKEMELQSVMSQYESLR-----SEMETMQSEKNKAID---------EALAKLGSLTEEADKSGKRAENATEQLGAAQVTNTELEAELRRLKVQCDQWRKAAEAAATMLSGGNNNNNSNGKYVERTGSLES 540          
BLAST of CF835343 vs. ExPASy Swiss-Prot
Match: ICR4_ARATH (Interactor of constitutive active ROPs 4 OS=Arabidopsis thaliana GN=ICR4 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.740e-16
Identity = 48/129 (37.21%), Postives = 80/129 (62.02%), Query Frame = -3
Query:  420 DKETELQNISEENEMLKLEVSKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLSTG--NNGKCMERSGSIDSNY 800
            D E E  ++SEENE LK ++ K +            E+  A++ E E   K+  + EE ++SN   A++ ++LE+ + A    EAE+++LKVQ++QWRKAA+AAA++LS G   NG+  E+ GS++ ++
Sbjct:  170 DLEKERVSLSEENETLKDQLKKTD-----------TEMSCAKAKEDEIASKVSQIGEELEESNETTAKLKKKLESVEEAKETLEAEMKKLKVQTEQWRKAADAAAAVLSGGVEMNGRFSEQCGSMEKHF 287          
BLAST of CF835343 vs. ExPASy Swiss-Prot
Match: ICR1_ARATH (Interactor of constitutive active ROPs 1 OS=Arabidopsis thaliana GN=ICR1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.052e-14
Identity = 45/127 (35.43%), Postives = 75/127 (59.06%), Query Frame = -3
Query:  420 DKETELQNISEENEMLKLEVSKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNY 800
            D E E +++ +ENE LK           N  S+ A+E+   ++ E E + K+  + EE ++S  + A + E+LE+ + A    EAE+++L+VQ++QWRKAA+AAA++LS        +RSGS +  Y
Sbjct:  181 DMEKEHESLGKENESLK-----------NQLSDSASEISNVKANEDEMVSKVSRIGEELEESRAKTAHLKEKLESMEEAKDALEAEMKKLRVQTEQWRKAADAAAAVLSGEFEMNGRDRSGSTEKYY 296          
The following BLAST results are available for this feature:
BLAST of CF835343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ICR3_ARATH2.258e-2946.71Interactor of constitutive active ROPs 3 OS=Arabid... [more]
ICR2_ARATH4.873e-2453.08Interactor of constitutive active ROPs 2, chloropl... [more]
ICR4_ARATH3.740e-1637.21Interactor of constitutive active ROPs 4 OS=Arabid... [more]
ICR1_ARATH2.052e-1435.43Interactor of constitutive active ROPs 1 OS=Arabid... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01B09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835343 ID=CF835343; Name=CF835343; organism=Citrus sinensis; type=EST; length=802bp
TTTTTTTTTTTTTTTGACGGAGATCAAAGGAAACCATCAGCGCATGGTTC
AAAATCCAGAATCACGTCTTAGCATTAATGTCCGATACTATCATTCCTAA
CAACATACATATATGTTGTAATTCCAAACAAGTGAAATCCAATATTTGCA
AACCATTAATGTGACATGTATACTTTGCACTACTACAAGATAAATATCGA
GAACAAGCTATTAAATACTGCATCAAGTGCCCATTTTCACTTCGTAACAA
AATGAATTGGCTGTCCCTATCGAAAGAAGCTGGGAGCATATTGATTCTAT
TTCTGTGGTTTCTTCCACAACACGCCAATCTTCTTTAATACGTTTCCATT
CTTCTTCTTCAGCAAATCATCATCTATGTCATCCGAATAAGGTAAAGGTA
TCTTTCCGGTAATAGGATTATAGTTGCTGTCAATTGATCCACTTCTCTCC
ATACATTTCCCATTGTTTCCAGTTGAAAGCATAGAGGCAGCCGCCTCAGC
AGCCTTTCTCCACTGGTCGGACTGCACTTTTAGCCTTCTCAACTCTGCCT
CGGCTTCACAGTTTGCCGACTGTGCTGCCTCAAGCTGCTCGGCCATTCTT
GCGGCTCTCCTGTTACTCTTATCAGCCTCCTCCATTAGAAGCCCGAGCTT
CATCAGTGCCTCTTTCTCAGCAGATCTAGCTGCCTCTACTTCTGCAGCCA
AATTACTGTTCATATTAGGAGTGTCCAATTCCCTTTTGCTGACTTCCAGC
TTCAGCATCTCATTCTCCTCAGATATATTTTGCAGTTCTGTCTCCTTATC
CA
back to top