CF835344

Overview
NameCF835344
Unique NameCF835344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835344_ssr686 microsatellite CF835344_ssr686:686..697. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF835344 vs. ExPASy Swiss-Prot
Match: ICR3_ARATH (Interactor of constitutive active ROPs 3 OS=Arabidopsis thaliana GN=ICR3 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.079e-51
Identity = 118/241 (48.96%), Postives = 151/241 (62.66%), Query Frame = 3
Query:   24 EVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEVSKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSXXXXXXXXXXXXXXXXXXXXXLWKKPQK 746
            + EL++EL+ AKS+I+ELKA LMDKETELQ ISEE +   M+L KN   Q+E  +  +L+KL +A+E+LKA+LMDKETELQ +S+ENE LK ++ K E D                   ++A +KLG+ MEEADKS+++A R+ EQLEA Q++N E E ELR+LKVQS+QWRKAAEAA +MLS GNNGK  E       NYN        PYS                     LWKKPQK
Sbjct:  356 QAELQSELKIAKSEIDELKARLMDKETELQFISEERDNFSMKLMKN---QKEIDVEAELKKLREAIENLKADLMDKETELQIVSDENETLKSDIHKSETDV------------------QDAFLKLGIAMEEADKSSKKAVRVTEQLEATQASNSEMETELRKLKVQSNQWRKAAEAATAMLSAGNNGKFAE-------NYNQTNS----PYSEDIDDELTKKKNGNVLKKIGVLWKKPQK 564          
BLAST of CF835344 vs. ExPASy Swiss-Prot
Match: ICR2_ARATH (Interactor of constitutive active ROPs 2, chloroplastic OS=Arabidopsis thaliana GN=ICR2 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.931e-38
Identity = 100/214 (46.73%), Postives = 131/214 (61.21%), Query Frame = 3
Query:   21 REVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDK---------NLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEVSKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLSTGN-----NGKCMERSGSIDS 620
            RE EL  EL+K K++ + L   LMDKE +L+ + +ENE L+ ++ +         N + Q E +   +L+KL   V +L+ANLMDKE ELQ++  + E L+      E++T     N A +         EAL KLG L EEADKS +RA    EQL AAQ  N E EAELRRLKVQ DQWRKAAEAAA+MLS GN     NGK +ER+GS++S
Sbjct:  341 REAELGEELKKTKAERDSLHERLMDKEAKLRILVDENEILNSKIKEKEEVYLNLENSLNQNEPEDTGELKKLESDVMELRANLMDKEMELQSVMSQYESLR-----SEMETMQSEKNKAID---------EALAKLGSLTEEADKSGKRAENATEQLGAAQVTNTELEAELRRLKVQCDQWRKAAEAAATMLSGGNNNNNSNGKYVERTGSLES 540          
BLAST of CF835344 vs. ExPASy Swiss-Prot
Match: ICR4_ARATH (Interactor of constitutive active ROPs 4 OS=Arabidopsis thaliana GN=ICR4 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.349e-19
Identity = 62/203 (30.54%), Postives = 111/203 (54.68%), Query Frame = 3
Query:   36 EAELQKAKSDIEELKANLMD----KETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEVSKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLSTG--NNGKCMERSGSIDSNY 626
            EA  ++A+ ++   K+   +    +  ++ G   +   +   LD+    + E   N++L      +  LKA L D E E  ++SEENE LK ++ K +            E+  A++ E E   K+  + EE ++SN   A++ ++LE+ + A    EAE+++LKVQ++QWRKAA+AAA++LS G   NG+  E+ GS++ ++
Sbjct:   97 EAAKKRAQEELHRKKSKKPNTPAPERDDIPGDGHQETDVFEVLDEKAK-ESEKTKNDELASKEDQINVLKARLYDLEKERVSLSEENETLKDQLKKTD-----------TEMSCAKAKEDEIASKVSQIGEELEESNETTAKLKKKLESVEEAKETLEAEMKKLKVQTEQWRKAADAAAAVLSGGVEMNGRFSEQCGSMEKHF 287          
BLAST of CF835344 vs. ExPASy Swiss-Prot
Match: ICR1_ARATH (Interactor of constitutive active ROPs 1 OS=Arabidopsis thaliana GN=ICR1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.492e-18
Identity = 60/195 (30.77%), Postives = 106/195 (54.36%), Query Frame = 3
Query:   54 AKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVED----LKANLMDKETELQNISEENEMLKLEVSKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNY 626
            A+ +    +A  +D++     + +E +   + ++K  + + E +  ND  +   A ED    LKA L D E E +++ +ENE LK           N  S+ A+E+   ++ E E + K+  + EE ++S  + A + E+LE+ + A    EAE+++L+VQ++QWRKAA+AAA++LS        +RSGS +  Y
Sbjct:  113 ARVEESATEAERIDRDEIPGDVQKETDVFEVPVEKIAVEEEELRSGNDEAEKLVAKEDEIKMLKARLYDMEKEHESLGKENESLK-----------NQLSDSASEISNVKANEDEMVSKVSRIGEELEESRAKTAHLKEKLESMEEAKDALEAEMKKLRVQTEQWRKAADAAAAVLSGEFEMNGRDRSGSTEKYY 296          
BLAST of CF835344 vs. ExPASy Swiss-Prot
Match: ICR5_ARATH (Interactor of constitutive active ROPs 5 OS=Arabidopsis thaliana GN=ICR5 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.766e-11
Identity = 66/232 (28.45%), Postives = 116/232 (50.00%), Query Frame = 3
Query:   45 LQKAKSDIEELKANLMDKETELQGISEENEGLHM---QLDKNLMCQRESQLNNDLRKLAQA-------VEDLKANLMDKET-----------ELQNISEENEMLKLEVSKRELDTPNMNSNLAAEVEAARSAEKEALMKL-------GLLMEEADKSNRRAARMAEQLEA----------AQSANCEA-EAELRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSN 623
            L  A +++++LK+ L + E+EL+    E   L     QL++  +  R+S  + ++ +L +A       +  LK+ +   ET           ++++  E+ E +K   S+RE +     +    E+E  R   KE + K+        L   E+D    R + M +++E            ++AN EA EAEL+R+K+Q +QWRKAAE AAS+L   NN +  ER+ SI+++
Sbjct:  158 LSSAINEVQKLKSKLFESESELEQSKYEVRSLEKLVRQLEEERVNSRDSSSSMEVEELKEAMNLSRQEITQLKSAVEAAETRYQEEYIQSTLQIRSAYEQTEAVKSRYSQREAELTEELNRTKDEIEGLR---KELMEKVKEDESTGDLKKLESDLMEVRGSLMDKEMELQILRSAMEKKVETANTEAMEAELKRVKIQCEQWRKAAETAASIL---NNDE--ERTDSIETS 381          
The following BLAST results are available for this feature:
BLAST of CF835344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ICR3_ARATH5.079e-5148.96Interactor of constitutive active ROPs 3 OS=Arabid... [more]
ICR2_ARATH4.931e-3846.73Interactor of constitutive active ROPs 2, chloropl... [more]
ICR4_ARATH1.349e-1930.54Interactor of constitutive active ROPs 4 OS=Arabid... [more]
ICR1_ARATH1.492e-1830.77Interactor of constitutive active ROPs 1 OS=Arabid... [more]
ICR5_ARATH1.766e-1128.45Interactor of constitutive active ROPs 5 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01B09_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835344 ID=CF835344; Name=CF835344; organism=Citrus sinensis; type=EST; length=841bp
TAAAACATCAGTCAGGCTTAAGGGAGGTTGAACTGGAAGCAGAACTACAG
AAGGCAAAGTCTGACATTGAGGAGTTGAAGGCCAACCTGATGGATAAAGA
AACTGAACTGCAGGGTATTTCAGAAGAGAATGAGGGGCTCCACATGCAAC
TCGACAAAAATCTAATGTGCCAGAGGGAATCTCAACTGAACAATGATCTG
CGGAAACTTGCACAAGCTGTTGAAGATTTGAAGGCAAATTTAATGGATAA
GGAGACAGAACTGCAAAATATATCTGAGGAGAATGAGATGCTGAAGCTGG
AAGTCAGCAAAAGGGAATTGGACACTCCTAATATGAACAGTAATTTGGCT
GCAGAAGTAGAGGCAGCTAGATCTGCTGAGAAAGAGGCACTGATGAAGCT
CGGGCTTCTAATGGAGGAGGCTGATAAGAGTAACAGGAGAGCCGCAAGAA
TGGCCGAGCAGCTTGAGGCAGCACAGTCGGCAAACTGTGAAGCCGAGGCA
GAGTTGAGAAGGCTAAAAGTGCAGTCCGACCAGTGGAGAAAGGCTGCTGA
GGCGGCTGCCTCTATGCTTTCAACTGGAAACAATGGGAAATGTATGGAGA
GAAGTGGATCAATTGACAGCAACTATAATCCTATTACCGGAAAGATACCT
TTACCTTATTCGGATGACATAGATGATGATTTGCTGAAGAAGAAGAATGG
AAACGTATTAAAGAAGATTGGCGTGTTGTGGAAGAAACCACAGAAATAGA
ATCAATATGCTCCCAGCTTCTTTCGATAGGGACAGCCAATTCATTTTGTT
ACGAAAGTGAAATGGGCACTTGATGCAGTATTTAATAGCTT
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