CF835347

Overview
NameCF835347
Unique NameCF835347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1098 contig Csv1_Contig1098:1..747. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835347 vs. ExPASy Swiss-Prot
Match: NSUN2_CHICK (tRNA (cytosine-5-)-methyltransferase NSUN2 OS=Gallus gallus GN=NSUN2 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.218e-34
Identity = 93/248 (37.50%), Postives = 124/248 (50.00%), Query Frame = 3
Query:    3 DIWRTWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIRRPGLRKWKVRDK-GIWLASHKHVRKFRRIGIVPSMFPSGSSHMDVTDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPL------PVVQEK------------------HINPEEKMLPRNDDPPKK---LQNQDTEE 662
            D+W+ W       LH LQ++IA RG+  L  GGR+VYSTCS+NP+ENEAV+A +L K +G++EL DVS+E+P L R PG+ KWKV  K G W    K V   R+  I P+MFP                                        EE++  + LERC+R++PH QN+G FF+AVL K SP+      P V +K                    +  EK     D+ PKK   LQN DTE+
Sbjct:  282 DVWKKWTTQNSLQLHGLQLRIATRGVEQLAEGGRMVYSTCSLNPIENEAVIASLLEKSQGALELADVSSELPGLKRMPGITKWKVMLKDGQWFEEWKDVPSNRQTQIRPTMFPIKE-------------------------------------EEKLKAMNLERCIRILPHHQNTGGFFVAVLIKKSPMPWNKRQPKVHQKLPGKTEDTEVTATNAGDGSEDATEKPTLAEDEEPKKVQELQNSDTEQ 492          
BLAST of CF835347 vs. ExPASy Swiss-Prot
Match: NSUN2_XENTR (tRNA (cytosine-5-)-methyltransferase NSUN2 OS=Xenopus tropicalis GN=nsun2 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.945e-32
Identity = 77/190 (40.53%), Postives = 105/190 (55.26%), Query Frame = 3
Query:    3 DIWRTWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIRRPGLRKWKVRDK-GIWLASHKHVRKFRRIGIVPSMFPSGSSHMDVTDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLP 569
            D+W+ W       LH LQ++IA RG+  L  GGR+VYSTCS+NPVE+EAV+A +L K EGS+EL DV++E+P L   PG+ +WKV  K G W    + +   R   I P+MFP            PK                          EE++  + L RCMR++PH QN+G FF+AVL K +P+P
Sbjct:  284 DVWKKWTTLNSLQLHGLQIRIATRGVEQLAEGGRMVYSTCSLNPVEDEAVIASLLDKSEGSLELADVASEIPGLKWMPGITQWKVMTKEGHWYEKWEDIPTSRHTQIRPTMFP------------PKD-------------------------EEKLKSMNLNRCMRILPHHQNTGGFFVAVLIKKAPMP 436          
BLAST of CF835347 vs. ExPASy Swiss-Prot
Match: NSUN2_HUMAN (tRNA (cytosine-5-)-methyltransferase NSUN2 OS=Homo sapiens GN=NSUN2 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.646e-31
Identity = 91/248 (36.69%), Postives = 123/248 (49.60%), Query Frame = 3
Query:    3 DIWRTWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIRRPGLRKWKVRDK-GIWLASHKHVRKFRRIGIVPSMFPSGSSHMDVTDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEEKMLPRNDDPPKKLQNQDTEELNGMEVDLADGTDEK--DPESSLEANS 737
            D+W+ W       LH LQ++IA RG   L  GGR+VYSTCS+NP+E+EAV+A +L K EG++EL DVSNE+P L   PG+ +WKV  K G W      V   R   I P+MFP            PK                           E++  + LERC+R++PH QN+G FF+AVL K S +P  + +                 KLQ +  E     ++  AD T+ K  DP S LE+ S
Sbjct:  282 DVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLEKSEGALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFP------------PKD-------------------------PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQ----------------PKLQGKSAETRESTQLSPADLTEGKPTDP-SKLESPS 475          
BLAST of CF835347 vs. ExPASy Swiss-Prot
Match: NSUN2_XENLA (tRNA (cytosine-5-)-methyltransferase NSUN2 OS=Xenopus laevis GN=nsun2 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.808e-31
Identity = 75/190 (39.47%), Postives = 105/190 (55.26%), Query Frame = 3
Query:    3 DIWRTWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIRRPGLRKWKVRDK-GIWLASHKHVRKFRRIGIVPSMFPSGSSHMDVTDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLP 569
            D+W+ W       LH LQ++IA RG+  L  GGR+VYSTCS+NPVE+EAV+  +L K EGS+EL DV++E+P L   PG+ +W+V  K G W    + V   R   I P+MFP                             ++D        EE++  + L RCMR++PH QN+G FF+AVL K +P+P
Sbjct:  280 DVWKKWTTLNSLQLHGLQIRIATRGVEQLAEGGRMVYSTCSLNPVEDEAVIVSLLDKSEGSLELADVASELPGLKWMPGITQWRVMTKEGQWFEKWEDVPTSRHTQIRPTMFP-----------------------------LKD--------EEKLKSMNLNRCMRILPHHQNTGGFFVAVLIKKAPMP 432          
BLAST of CF835347 vs. ExPASy Swiss-Prot
Match: NSUN2_MOUSE (tRNA (cytosine-5-)-methyltransferase NSUN2 OS=Mus musculus GN=Nsun2 PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.808e-31
Identity = 77/190 (40.53%), Postives = 105/190 (55.26%), Query Frame = 3
Query:    3 DIWRTWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIRRPGLRKWKVRDK-GIWLASHKHVRKFRRIGIVPSMFPSGSSHMDVTDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLP 569
            D+W+ W       LH LQ++IA RG   L  GGR+VYSTCS+NPVE+EAV+A +L K EG++EL DVS E+P L   PG+ +WKV  + G W A    V + R   I P+MFP        TD+                              E++  + LERC+R++PH QN+G FF+AVL K +P+P
Sbjct:  282 DVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPVEDEAVIAALLEKSEGALELADVSAELPGLKWMPGVSQWKVMTRDGQWFADWHEVPQGRHTQIRPTMFPP-------TDL------------------------------EKLQAMHLERCLRILPHHQNTGGFFVAVLVKKAPMP 434          
BLAST of CF835347 vs. ExPASy Swiss-Prot
Match: YF6H_SCHPO (Putative tRNA (cytosine-5-)-methyltransferase C23C4.17 OS=Schizosaccharomyces pombe GN=SPAC23C4.17 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.296e-30
Identity = 81/219 (36.99%), Postives = 110/219 (50.23%), Query Frame = 3
Query:    6 IWRTWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIRRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDVTDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEEKMLPRNDDPPKKLQNQDTEE 662
            +WR W+      LH LQ++I +RG+ LLKVGG +VYSTCS+NP+ENEAVV   L+   G+V LVDVS ++P L R PGL  WKV D  +            +I +  SM+P                                        EEE+S L +ERC RL PH QN+G FF+AVLQK  P   +  +  +P++        PP+  + Q TE+
Sbjct:  285 LWREWSANSAFSLHPLQLRILIRGLQLLKVGGCLVYSTCSINPIENEAVVTAALKATGGAVSLVDVSKKLPLLKRDPGLLSWKVLDDSLNEFQSPAENTNDKIELTESMWPLP--------------------------------------EEEMSKLHIERCARLYPHMQNTGGFFVAVLQKTDP---INSRSFDPKKYTASMEILPPEN-KRQRTEK 461          
BLAST of CF835347 vs. ExPASy Swiss-Prot
Match: NCL1_SCHPO (tRNA (cytosine-5-)-methyltransferase ncl1 OS=Schizosaccharomyces pombe GN=ncl1 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 5.856e-29
Identity = 79/224 (35.27%), Postives = 120/224 (53.57%), Query Frame = 3
Query:    6 IWRTWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIRRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDVTDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPL-----PVVQEKHINPEEKMLPRNDDPPKKLQNQDTEE 662
            +W  W++    GLH+ Q++I MRG+ LL+ GGR+VYSTCS+NP+ENEAVV+ +L    GSV LVDVS+E+PQL R  G+  W V D  +                  +++PS        D  PK          E  +++   L      ++E+++L ++ C+R+ PH QN+G FF+AVL+K   L       V +  +   E+ LP   +   K + QDT+E
Sbjct:  255 LWNEWSLKTALGLHATQIKILMRGLQLLEKGGRLVYSTCSLNPIENEAVVSAVLNATRGSVRLVDVSSELPQLKRSQGVDNWVVCDSDL------------------NIYPS-------FDTLPK----------ELYEKMPPTLWPLP--KKELAELNIQNCLRIYPHFQNTGGFFVAVLEKYENLTSSMKTAVDDNKVFLREQKLP--SEQASKKRKQDTQE 439          
BLAST of CF835347 vs. ExPASy Swiss-Prot
Match: NCL1_YEAST (tRNA (cytosine-5-)-methyltransferase NCL1 OS=Saccharomyces cerevisiae GN=NCL1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.474e-28
Identity = 74/221 (33.48%), Postives = 107/221 (48.42%), Query Frame = 3
Query:    3 DIWRTWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIRRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDVTDIEPKHGNVTD-VNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEEKMLPRNDDPPKKLQNQDTEE 662
            ++W+ WN   G GLH++Q+ I  RG+ LLK  GR+VYSTCS+NP+ENEAVVAE LRK    + LV+  +++P LIR  G+ KW V D+                                        N+T+    DEG        +     EEE S   L+ CMR+ PH QN+G FFI V +KV        + ++ E   L       KK++ ++ ++
Sbjct:  271 NVWKDWNTQAGLGLHAVQLNILNRGLHLLKNNGRLVYSTCSLNPIENEAVVAEALRKWGDKIRLVNCDDKLPGLIRSKGVSKWPVYDR----------------------------------------NLTEKTKGDEGTLD-----SFFSPSEEEASKFNLQNCMRVYPHQQNTGGFFITVFEKVEDSTEAATEKLSSETPALESEGPQTKKIKVEEVQK 446          
BLAST of CF835347 vs. ExPASy Swiss-Prot
Match: NSUN2_DROME (tRNA (cytosine-5-)-methyltransferase CG6133 OS=Drosophila melanogaster GN=CG6133 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.553e-26
Identity = 65/186 (34.95%), Postives = 98/186 (52.69%), Query Frame = 3
Query:    3 DIWRTWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIRRPGLRKWKVRDKGI--WLASHKHVRKFRRIGIVPSMFPSGSSHMDVTDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQK 554
            DIW  WN+     LH +Q +I  RG  +L+VGGR+VYSTCS+NP+ENEAV+  I++  +G++ELVD  + VP L  +PG+  WK+  K +       + V +     I P MFP  +                                      +E++ + LE+C+R++PH Q+SG FF+AVL+K
Sbjct:  284 DIWLKWNLAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRIIKDADGALELVDAGHLVPGLKYKPGMTDWKLATKEVDQIFTRFEEVPESLHTIIRPGMFPLPA--------------------------------------DEMAKIGLEKCLRVLPHLQDSGGFFVAVLEK 431          
The following BLAST results are available for this feature:
BLAST of CF835347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
NSUN2_CHICK1.218e-3437.50tRNA (cytosine-5-)-methyltransferase NSUN2 OS=Gall... [more]
NSUN2_XENTR1.945e-3240.53tRNA (cytosine-5-)-methyltransferase NSUN2 OS=Xeno... [more]
NSUN2_HUMAN1.646e-3136.69tRNA (cytosine-5-)-methyltransferase NSUN2 OS=Homo... [more]
NSUN2_XENLA2.808e-3139.47tRNA (cytosine-5-)-methyltransferase NSUN2 OS=Xeno... [more]
NSUN2_MOUSE2.808e-3140.53tRNA (cytosine-5-)-methyltransferase NSUN2 OS=Mus ... [more]
YF6H_SCHPO5.296e-3036.99Putative tRNA (cytosine-5-)-methyltransferase C23C... [more]
NCL1_SCHPO5.856e-2935.27tRNA (cytosine-5-)-methyltransferase ncl1 OS=Schiz... [more]
NCL1_YEAST6.474e-2833.48tRNA (cytosine-5-)-methyltransferase NCL1 OS=Sacch... [more]
NSUN2_DROME3.553e-2634.95tRNA (cytosine-5-)-methyltransferase CG6133 OS=Dro... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01B11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835347 ID=CF835347; Name=CF835347; organism=Citrus sinensis; type=EST; length=747bp
CAGATATCTGGAGAACATGGAATGTAGGATTAGGCAATGGGCTCCATAGC
CTACAAGTTCAGATAGCCATGCGAGGTATATCTCTACTCAAAGTTGGTGG
AAGAATTGTTTATTCTACCTGCTCCATGAATCCAGTGGAGAATGAGGCTG
TGGTTGCCGAGATTTTGCGGAAATGTGAAGGATCTGTTGAACTCGTTGAT
GTCTCAAATGAGGTTCCCCAACTTATTCGTCGGCCAGGTCTTAGAAAGTG
GAAGGTACGTGACAAGGGCATCTGGTTAGCTTCCCACAAACATGTTCGGA
AATTCCGGAGAATCGGGATTGTTCCCAGCATGTTCCCTTCTGGCAGTAGC
CATATGGACGTAACTGACATTGAACCTAAGCATGGGAATGTTACTGATGT
AAATTCTGATGAAGGACTTCAGCAAGTGGAAGATGTTTTGACTTCGGCGG
ATGATTTGGAAGAGGAAGTCTCCGATCTTCCATTAGAACGTTGCATGAGG
TTAGTTCCTCATGATCAGAACTCTGGAGCCTTTTTCATTGCTGTCCTCCA
GAAAGTTTCCCCGCTGCCAGTAGTCCAGGAGAAACATATCAACCCAGAAG
AGAAGATGCTCCCTAGAAATGATGATCCACCTAAAAAATTACAAAACCAG
GATACAGAGGAATTGAATGGAATGGAGGTTGATTTAGCAGACGGTACAGA
TGAAAAAGATCCAGAAAGCTCTTTGGAGGCTAATTCTATTGATAATG
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