CF835355

Overview
NameCF835355
Unique NameCF835355
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10290 contig Csv1_Contig10290:369..1134. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835355 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 2.112e-13
Identity = 63/201 (31.34%), Postives = 99/201 (49.25%), Query Frame = -3
Query:  207 PQLGASES--EPILDVYGNQVDSSHRYYLVSALWGVKTGGGISADKGK-NGQ--CPTDVIQLSPKDKRGKNLGLLPYD-NSTIVRESTNIKLKFSRVFSFQQCN--KDSLWKVDNDNASLGKQFITIGEGK------TCQNFFKLEKVSASIFDMKIALDIPCLYKIVHCSTLVNGSCDTLCKDVGVF-NVDGVQRLVVVD 764
            P L A++S   P+LD+ G ++ +   YY+V  L     GGG++      NG   CP  V+Q   +    + L   P +    +VR ST++ + FS   +F  C     ++W++D  + S G+ F+TIG  K      T  ++FK+E+   S F           YK+V C T V GSC   C DVG++ +  G +RL + D
Sbjct:   24 PLLSAADSAPNPVLDIDGEKLRTGTNYYIVPVLRD--HGGGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFS---AFMPCRWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCGSGF-----------YKLVFCPT-VCGSCKVKCGDVGIYIDQKGRRRLALSD 207          
BLAST of CF835355 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.514e-11
Identity = 50/189 (26.46%), Postives = 93/189 (49.21%), Query Frame = -3
Query:  198 SEPILDVYGNQVDSSHRYYLVSALWGVKTGGGISADKGKNGQCPTDVIQLSPKDKRGKNLGLLPYDN-STIVRESTNIKLKFSRVFSFQQCNKDSLWKVDNDNASLGKQFITIGEGK------TCQNFFKLEKVSASIFDMKIALDIPCLYKIVHCSTLVNGSCDTLCKDVGVFNVDGVQRLVVVDDND 743
            + P+LD  G+++ +  +YY++S++ G   GGG++  +     CP  V+Q       G  +     D+   +VR ST++ ++F  +   + C+  ++W++DN + S GK ++T    K      T  ++FK+EK                 YK   C ++ + SC TLC D+G  + D  Q  + + DN+
Sbjct:   28 NSPVLDTDGDELQTGVQYYVLSSISGA-GGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPIRD-RLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGV------------LGYKFRFCPSVCD-SCTTLCSDIGRHSDDDGQIRLALSDNE 201          
BLAST of CF835355 vs. ExPASy Swiss-Prot
Match: SPOR1_IPOBA (Sporamin A OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.813e-11
Identity = 49/144 (34.03%), Postives = 76/144 (52.78%), Query Frame = -3
Query:  336 ASESEPILDVYGNQVDSSHRYYLVSALWGVKTGGGISADKGKNGQCPTDVIQLSPKD-KRGKNLGLLPY---DNSTIVRESTNIKLKFSRVFSFQQCNKDSLWKVDNDNASLGKQFITIGE-GKTCQNFFKLEKVSASIFDMKI 752
            AS   P+LD+ G++V +   YY+VSA+WG   GG   A      +C TDVI +SP D   G  + + P      ST+V  ST    +F+ + + + C  +  W + +D+AS G+ F+  GE      N FK+E V A++   K+
Sbjct:   37 ASSETPVLDINGDEVRAGGNYYMVSAIWGAGGGGLRLAHLDMMSKCATDVI-VSPNDLDNGDPITITPATADPESTVVMASTYQTFRFN-IATNKLCVNNVNWGIQHDSAS-GQYFLKAGEFVSDNSNQFKIELVDANLNSYKL 177          
The following BLAST results are available for this feature:
BLAST of CF835355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MIRA_RICDU2.112e-1331.34Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
ASP_THECC1.514e-1126.4621 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
SPOR1_IPOBA9.813e-1134.03Sporamin A OS=Ipomoea batatas PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01B17_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01B17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835355 ID=CF835355; Name=CF835355; organism=Citrus sinensis; type=EST; length=766bp
TTTTTTTTTTTTTTTTTAACAGCGAAAGCATCCTAGGCTATTTTATTTAT
GCTTAACCATAGAGATTAAAGAGTACTAGCCTGCTCCATTATTTAGAATA
ATACAGCCTGTTGGCTTATTCATTACAGAGACGGAAATAACATAGATCTT
CCACTATCAGCTGGAAATAACACAACAGGCAAAGGCAGATTTGGCTGATC
ATTATCATCAACCACAACTAGACGTTGGACGCCATCCACATTAAAAACGC
CAACGTCTTTGCAGAGTGTATCGCAAGAACCATTAACAAGTGTTGAACAA
TGAACAATTTTGTATAAACAGGGAATGTCTAGTGCTATTTTCATATCAAA
TATTGATGCACTAACTTTCTCAAGTTTAAAAAAATTTTGACACGTTTTAC
CTTCACCGATTGTTATAAACTGCTTTCCTAATGAAGCGTTATCGTTGTCA
ACTTTCCACAACGAATCTTTGTTACACTGCTGAAAAGAAAAAACTCTTGA
GAATTTCAATTTAATATTAGTGGATTCCCGGACAATTGTGGAATTGTCAT
ACGGAAGTAAACCTAAATTCTTTCCCCTTTTGTCCTTAGGACTTAATTGG
ATAACATCCGTTGGACACTGTCCATTTTTGCCTTTGTCCGCGCTAATTCC
ACCGCCGGTTTTAACTCCCCAGAGTGCTGAGACAAGATAATACCTGTGGC
TGGAGTCCACCTGGTTGCCATAGACATCTAAGATAGGTTCAGATTCTGAG
GCGCCCAACTGAGGTT
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