CF835357

Overview
NameCF835357
Unique NameCF835357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9870 contig Csv1_Contig9870:1183..1901. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835357 vs. ExPASy Swiss-Prot
Match: SPE1_PEA (Arginine decarboxylase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.686e-54
Identity = 111/188 (59.04%), Postives = 125/188 (66.49%), Query Frame = 3
Query:    3 KIDTFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHXXXXXXXXXXXXXXXMXXXXXXXXXXXQYFHSMPYLVVPSSCSLTAINNGGGLYYCNGEDYDA----VVDSSPNEDEQWSY 554
            KID FIGG +SLPLHEM G G    G YYLGMFLGG+YEEALGG+HNLFGGPSVVRVLQSDGPH FAVTRA+ G SC DVLRVMQHEP+LMFETLKHRA E+CGQ                 +           Q F +MPYLV  ++C L A+ N  G YYC+G+D+ A    V  S   EDE WSY
Sbjct:  557 KIDKFIGGESSLPLHEMEGHG----GGYYLGMFLGGSYEEALGGLHNLFGGPSVVRVLQSDGPHGFAVTRAVAGSSCADVLRVMQHEPQLMFETLKHRALEFCGQH------------DDDSVVNAGVLANSLAQSFDNMPYLVSSTTCCLNALTNNNGFYYCSGDDFSADTVSVATSVAGEDENWSY 728          
BLAST of CF835357 vs. ExPASy Swiss-Prot
Match: SPE1_ARATH (Arginine decarboxylase 1 OS=Arabidopsis thaliana GN=SPE1 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.274e-45
Identity = 103/185 (55.68%), Postives = 116/185 (62.70%), Query Frame = 3
Query:    3 KIDTFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHXXXXXXXXXXXXXXXMXXXXXXXXXXXQYFHSMPYLVVPSSC-SLTAINNGGGLYYCNGEDYDAVVDSSPNEDEQWSY 554
            KI+ FIGG +SLPLHEM   GC   G YYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPH FAVTRA+ G S  DVLR MQHEPELMF+TLKHRAEE     +                           + F++MPYL + +S  +LTA  N  G+YYC   D  A       +DE WSY
Sbjct:  529 KINKFIGGESSLPLHEMDNNGCSG-GRYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHGFAVTRAVMGQSSADVLRAMQHEPELMFQTLKHRAEEPRNNNNKACGDKG---------NDKLVVASCLAKSFNNMPYLSMETSTNALTAAVNNLGVYYC---DEAAAGGGGKGKDENWSY 700          
BLAST of CF835357 vs. ExPASy Swiss-Prot
Match: SPE1_SOYBN (Arginine decarboxylase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.603e-44
Identity = 101/184 (54.89%), Postives = 113/184 (61.41%), Query Frame = 3
Query:    3 KIDTFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHXXXXXXXXXXXXXXXMXXXXXXXXXXXQYFHSMPYLVVPSSCSLTAINNGGGLYYCNGEDYDAVVDSSPNEDEQWSY 554
            KID FI G +SLPLHEM GG       YYLGMFLGGAYEEALGGVHNLFGGPSVVRV QSDGPHSFAVTRA+PGPSCGDVLRVMQH+PELMFETLKHRA+EY   ++                           + F  MPYL+  SS                 +D  A V ++ +  EQWSY
Sbjct:  545 KIDKFINGESSLPLHEMEGGRT-----YYLGMFLGGAYEEALGGVHNLFGGPSVVRVSQSDGPHSFAVTRAVPGPSCGDVLRVMQHQPELMFETLKHRAQEYVSHDN-----------------AAALLAAGLARTFDRMPYLLSLSSFV--------------ADDVAAAVPAAQDLGEQWSY 692          
BLAST of CF835357 vs. ExPASy Swiss-Prot
Match: SPE1_DIACA (Arginine decarboxylase OS=Dianthus caryophyllus GN=ADC PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.851e-44
Identity = 104/195 (53.33%), Postives = 119/195 (61.03%), Query Frame = 3
Query:    3 KIDTFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHXXXXXXXXXXXXXXXMXXXXXXXXXXXQYFHSMPYLVVPSSCSLTAINNGGGL------YYCNGED--YDAVVDSSPNEDEQWSYCYA 563
            KID FIG  +SLPLHE+ GG       YYLGMFLGGAYEEALGGVHNLFGGPSVVRV QSDGP S+AVTRA+PGPS  DVLRVM HEPELMF+TLKHRAEE C  ++                           Q F+S PYLV   +      +NG GL      Y+   +D    A VD++  E+EQWSY  A
Sbjct:  554 KIDKFIGDESSLPLHELSGGE-----GYYLGMFLGGAYEEALGGVHNLFGGPSVVRVQQSDGPQSYAVTRAVPGPSSSDVLRVMHHEPELMFQTLKHRAEE-CDNDY-----------------TAGPLADMLAQSFNSTPYLVPGHATGSCGFSNGSGLVNGCREYFYGVDDGCNAAAVDAAAGEEEQWSYVCA 725          
BLAST of CF835357 vs. ExPASy Swiss-Prot
Match: SPE2_ARATH (Arginine decarboxylase 2 OS=Arabidopsis thaliana GN=SPE2 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.481e-42
Identity = 97/174 (55.75%), Postives = 111/174 (63.79%), Query Frame = 3
Query:    3 KIDTFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHXXXXXXXXXXXXXXXMXXXXXXXXXXXQYFHSMPYLVVPS---SCSLTAINNGGGLYYCNGEDYDAV 515
            KI+ FIGG +SLPLHE+   G G  G Y+LGMFLGGAYEEALGGVHNLFGGPSVVRV QSDGPHSFAVTRA+PG S  DVLR MQHEPELMF+TLKHRAEE    +                            + FH+MPYL       S SL+A  +  G YYC+ + YD +
Sbjct:  542 KINKFIGGESSLPLHELDKNGSG--GRYFLGMFLGGAYEEALGGVHNLFGGPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHRAEEMMHTKGGSEGENEEEEED----DEFNNVAASLDRSFHNMPYLATEQASPSNSLSAAISNLGFYYCDEDVYDYI 709          
BLAST of CF835357 vs. ExPASy Swiss-Prot
Match: SPE1_BRAJU (Arginine decarboxylase OS=Brassica juncea GN=ADC1 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.438e-38
Identity = 79/101 (78.22%), Postives = 83/101 (82.18%), Query Frame = 3
Query:    3 KIDTFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEE 305
            KI+ FIGG +SLPLHE+   G      YYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQ DGPH FAVTRAM G S  DVLR MQHEPELMF+TLKHRAEE
Sbjct:  535 KINKFIGGESSLPLHELDNNG------YYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQKDGPHGFAVTRAMMGQSSADVLRAMQHEPELMFQTLKHRAEE 629          
BLAST of CF835357 vs. ExPASy Swiss-Prot
Match: SPE1_ORYSJ (Arginine decarboxylase OS=Oryza sativa subsp. japonica GN=ADC1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.101e-35
Identity = 75/100 (75.00%), Postives = 81/100 (81.00%), Query Frame = 3
Query:    3 KIDTFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAE 302
            K+D FIGG  SLPLHE+   G   RG YYLGMFLGGAY+EALGG+HNLFGGPSVVRV QSDGPH FAVTRA  GPSC DVLR MQHEPE+MFE LK R +
Sbjct:  545 KVDHFIGGRHSLPLHELPVHGT--RG-YYLGMFLGGAYQEALGGLHNLFGGPSVVRVSQSDGPHCFAVTRAAAGPSCADVLRSMQHEPEVMFEVLKQRTD 641          
BLAST of CF835357 vs. ExPASy Swiss-Prot
Match: SPE1_SOLLC (Arginine decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.626e-23
Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = 3
Query:    3 KIDTFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFA 203
            K+D FIGG +SLPLHE+   G G+ G YYLGMFLGGAYEEALGG+HNLFGGPSVVRV+QSD PHSFA
Sbjct:  439 KVDKFIGGESSLPLHEI---GSGDGGRYYLGMFLGGAYEEALGGLHNLFGGPSVVRVMQSDSPHSFA 502          
BLAST of CF835357 vs. ExPASy Swiss-Prot
Match: SPEA_SYNR3 (Biosynthetic arginine decarboxylase OS=Synechococcus sp. (strain RCC307) GN=speA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.800e-14
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 3
Query:    3 KIDTFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCG 314
            K+  FI  G++ PL E+     GE  PY++G+FLGGAY+E +G +HNLFG  + V +  S G   + V   + G +  DVL  M+H PE + E L+  +EE  G
Sbjct:  512 KLARFIASGSAKPLLELHELKDGE--PYWIGLFLGGAYQEVMGNLHNLFGSTNAVSIRLSPG-GPYRVEHVVRGQTNSDVLEAMEHNPEALLERLRQASEEAIG 612          
BLAST of CF835357 vs. ExPASy Swiss-Prot
Match: SPEA_SYNPX (Biosynthetic arginine decarboxylase OS=Synechococcus sp. (strain WH8102) GN=speA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.223e-12
Identity = 39/103 (37.86%), Postives = 59/103 (57.28%), Query Frame = 3
Query:    3 KIDTFIGGGTS---LPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAE 302
            ++D FIG G     L LHE+      +  PY +G+FL GAY+E +G +HNLFG  + V +  S G  S+ +   + G +  DVL  M+H+P ++ E L+  AE
Sbjct:  516 RLDRFIGDGQPKQLLELHEL-----DDNNPYLIGLFLSGAYQEVMGNLHNLFGTTNAVHIRLSPG-GSYRIDHVVRGDTNADVLEAMEHDPRVLLERLRVAAE 612          
The following BLAST results are available for this feature:
BLAST of CF835357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SPE1_PEA1.686e-5459.04Arginine decarboxylase OS=Pisum sativum PE=2 SV=1[more]
SPE1_ARATH9.274e-4555.68Arginine decarboxylase 1 OS=Arabidopsis thaliana G... [more]
SPE1_SOYBN4.603e-4454.89Arginine decarboxylase OS=Glycine max PE=2 SV=1[more]
SPE1_DIACA7.851e-4453.33Arginine decarboxylase OS=Dianthus caryophyllus GN... [more]
SPE2_ARATH1.481e-4255.75Arginine decarboxylase 2 OS=Arabidopsis thaliana G... [more]
SPE1_BRAJU6.438e-3878.22Arginine decarboxylase OS=Brassica juncea GN=ADC1 ... [more]
SPE1_ORYSJ5.101e-3575.00Arginine decarboxylase OS=Oryza sativa subsp. japo... [more]
SPE1_SOLLC2.626e-2377.61Arginine decarboxylase OS=Solanum lycopersicum PE=... [more]
SPEA_SYNR33.800e-1440.38Biosynthetic arginine decarboxylase OS=Synechococc... [more]
SPEA_SYNPX1.223e-1237.86Biosynthetic arginine decarboxylase OS=Synechococc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01B18_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01B18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835357 ID=CF835357; Name=CF835357; organism=Citrus sinensis; type=EST; length=719bp
GTAAGATTGATACGTTCATTGGTGGTGGTACGAGCTTGCCGTTACATGAA
ATGGTTGGTGGTGGTTGTGGTGAGCGTGGGCCTTATTATTTGGGGATGTT
CTTGGGCGGGGCTTATGAGGAGGCCCTCGGTGGAGTCCACAACTTGTTTG
GTGGTCCAAGCGTGGTACGCGTCTTGCAGAGTGATGGTCCGCACAGCTTT
GCTGTGACTCGGGCCATGCCTGGGCCGTCTTGTGGGGATGTCCTCCGGGT
GATGCAGCACGAGCCCGAGCTCATGTTTGAGACCCTCAAACACCGTGCTG
AGGAATATTGTGGACAGGAGCATGGTAGTAATGGTGGGGATGGTGATACT
GATGATTACGATCACGGCATGGCTAATAATTCTGCTTTAGCTAGCAGCCT
TGCTCAGTACTTTCACAGCATGCCATATCTTGTGGTGCCATCCTCTTGTT
CTTTGACTGCTATCAATAATGGTGGTGGGTTATACTATTGCAACGGGGAG
GATTACGATGCTGTTGTTGATTCTTCTCCAAATGAGGATGAGCAGTGGTC
ATACTGCTATGCTTAGATGTGTATTCTTAGTATCACCTGTCACCCTATCG
AAATGCTTCATCTAATCCTTGAGCTTGTCTTGTTGCAAGTTTTTATTCCG
TAATTTTAATTTCATTGTCTATTTTAATTTTTAGATTTTCATTGCAAAAG
ATGGAAGCAGTTGAACGTT
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