CF835359

Overview
NameCF835359
Unique NameCF835359
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8093 contig Csv1_Contig8093:1147..1905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835359 vs. ExPASy Swiss-Prot
Match: TDT_ARATH (Tonoplast dicarboxylate transporter OS=Arabidopsis thaliana GN=TDT PE=2 SV=2)

HSP 1 Score: 275.018 bits (702), Expect = 3.054e-73
Identity = 138/172 (80.23%), Postives = 152/172 (88.37%), Query Frame = -3
Query:  242 IPSMKQKGEKXMDWNKCKKLPXNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTDGDV 757
            IPS  +KGEK MDWNKCKKLP NI+LLLGAGFAIADGVRTSGLA+ LSK L FLE APY AIAP VCLI+A ITEFTSNNATTTL++PLLI+IAK M +HPLLLMVPGAIGAQF+FLLPTGTPSN+VGFTTGHIEI+DMIKTGLPLKIAG   ++ LMPTLGAYVF + G V
Sbjct:  369 IPSNIKKGEKLMDWNKCKKLPWNIVLLLGAGFAIADGVRTSGLAEVLSKGLVFLETAPYWAIAPTVCLIAATITEFTSNNATTTLLVPLLIEIAKNMGIHPLLLMVPGAIGAQFAFLLPTGTPSNVVGFTTGHIEIKDMIKTGLPLKIAGTIFLSILMPTLGAYVFASMGGV 540          
BLAST of CF835359 vs. ExPASy Swiss-Prot
Match: S13A3_MOUSE (Solute carrier family 13 member 3 OS=Mus musculus GN=Slc13a3 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.696e-31
Identity = 65/159 (40.88%), Postives = 99/159 (62.26%), Query Frame = -3
Query:  260 EKXMDWNKCKK-LPXNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVF 733
            E  + W K ++ +P NIILLLG GFA+A G   SGL+  +   L  LE  P L    ++ ++ A  TEF SN AT  + LP+L ++A  +HVHPL LM+PG +G  ++F+LP  TP N + F+TGH+ ++DM++TGL + + G+  ++  M T    +F
Sbjct:  411 EPLLSWKKAQETVPWNIILLLGGGFAMAKGCEESGLSAWIGGQLHPLEHVPPLLAVLLITVVIAFFTEFASNTATIIIFLPVLAELAIRLHVHPLYLMIPGTVGCSYAFMLPVSTPPNSIAFSTGHLLVKDMVRTGLLMNLMGVLLLSLAMNTWAQTIF 569          
BLAST of CF835359 vs. ExPASy Swiss-Prot
Match: S13A3_RAT (Solute carrier family 13 member 3 OS=Rattus norvegicus GN=Slc13a3 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.415e-31
Identity = 64/159 (40.25%), Postives = 98/159 (61.64%), Query Frame = -3
Query:  260 EKXMDWNKCKK-LPXNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVF 733
            E  + W K ++ +P NIILLLG GFA+A G   SGL+  +   L  LE  P L    ++ ++ A  TEF SN AT  + LP+L ++A  +HVHPL LM+PG +   ++F+LP  TP N + F+TGH+ ++DM++TGL + + G+  ++  M T    +F
Sbjct:  411 EPLLSWKKAQETVPWNIILLLGGGFAMAKGCEESGLSAWIGGQLHPLEHVPPLLAVLLITVVIAFFTEFASNTATIIIFLPVLAELAIRLHVHPLYLMIPGTVSCSYAFMLPVSTPPNSIAFSTGHLLVKDMVRTGLLMNLMGVLLLSLAMNTWAQAIF 569          
BLAST of CF835359 vs. ExPASy Swiss-Prot
Match: S13A5_HUMAN (Solute carrier family 13 member 5 OS=Homo sapiens GN=SLC13A5 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.215e-29
Identity = 65/159 (40.88%), Postives = 101/159 (63.52%), Query Frame = -3
Query:  251 MDWNKCK-KLPXNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTD 724
            +DW   + K+P  I+LLLG GFA+A G   SGL+  + K ++ L A P  AI  I+ L+ A+ TE TSN ATTTL LP+   +++++ ++PL +M+P  + A F+F+LP  TP N + FT GH+++ DM+KTG+ + I G+  +   + T G  +F  D
Sbjct:  397 LDWKVTQEKVPWGIVLLLGGGFALAKGSEASGLSVWMGKQMEPLHAVPPAAITLILSLLVAVFTECTSNVATTTLFLPIFASMSRSIGLNPLYIMLPCTLSASFAFMLPVATPPNAIVFTYGHLKVADMVKTGVIMNIIGVFCVFLAVNTWGRAIFDLD 555          
BLAST of CF835359 vs. ExPASy Swiss-Prot
Match: S13A3_HUMAN (Solute carrier family 13 member 3 OS=Homo sapiens GN=SLC13A3 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.587e-29
Identity = 63/159 (39.62%), Postives = 96/159 (60.38%), Query Frame = -3
Query:  260 EKXMDWNKCKK-LPXNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVF 733
            E  + W K ++ +P NIILLLG GFA+A G   SGL+  +   L  LE  P      ++ ++ A  TEF SN AT  + LP+L ++A  + VHPL LM+PG +G  F+F+LP  TP N + F +GH+ ++DM++TGL + + G+  ++  M T    +F
Sbjct:  413 EPLLTWKKAQETVPWNIILLLGGGFAMAKGCEESGLSVWIGGQLHPLENVPPALAVLLITVVIAFFTEFASNTATIIIFLPVLAELAIRLRVHPLYLMIPGTVGCSFAFMLPVSTPPNSIAFASGHLLVKDMVRTGLLMNLMGVLLLSLAMNTWAQTIF 571          
BLAST of CF835359 vs. ExPASy Swiss-Prot
Match: S13A5_RAT (Solute carrier family 13 member 5 OS=Rattus norvegicus GN=Slc13a5 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.031e-29
Identity = 64/152 (42.11%), Postives = 98/152 (64.47%), Query Frame = -3
Query:  251 KKLPXNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTD 706
            +K+P  I+LLLG GFA+A G  TSGL++ +++ ++ L +     I  I+  I A+ TE TSN ATTTL LP+   +A+++ +HPL +M+P  + A  +F+LP  TP N + F  GH+++ DM+KTGL + I GIA++   + T G  VF  D
Sbjct:  408 EKVPWGIVLLLGGGFAMAKGCETSGLSEWMARQMEPLSSVRPAIITLILSCIVAMTTECTSNVATTTLFLPIFASMARSIGIHPLYVMIPCTLSASLAFMLPVATPPNAIVFAYGHLKVIDMVKTGLVMNILGIASVFLSVNTWGRAVFNLD 559          
BLAST of CF835359 vs. ExPASy Swiss-Prot
Match: SDCS_STAS1 (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sdcS PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.755e-28
Identity = 62/165 (37.58%), Postives = 96/165 (58.18%), Query Frame = -3
Query:  251 KQKGEKXMDWNKCKKLPXNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTD 745
            K+K ++ +DW   K LP  +++L G G A+A G+  SGLA+ L + L  +E    L I  ++ +    +TE TSN AT T++LP+L  ++  ++VHPLLLMVP A+ A  +++LP GTP N + F TG I I+ M   G  + +  I  +  ++  L   V G D
Sbjct:  347 KEKHKRIIDWEVAKDLPWGVLILFGGGLALAKGISESGLANWLGEQLKLIEGVSPLVIVLVITIFVLFLTEITSNTATATMILPILATLSVAVNVHPLLLMVPAAMAANCAYMLPVGTPPNAIVFGTGKISIKKMASVGFWVNLLSIVVIVLVVYFLVPPVLGID 511          
BLAST of CF835359 vs. ExPASy Swiss-Prot
Match: S13A5_MOUSE (Solute carrier family 13 member 5 OS=Mus musculus GN=Slc13a5 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.644e-27
Identity = 62/159 (38.99%), Postives = 96/159 (60.38%), Query Frame = -3
Query:  251 MDWNKCK-KLPXNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTD 724
            +DW   + K+P +I+LLLG GFA+A G  TSGL+  ++  ++ L       I  I+  + A+ TE TSN ATTTL LP+   +A+++ +HPL +M+P  + A  +F+LP  TP N + F  GH+ + DM+KTGL +   GI ++   + T G  +F  D
Sbjct:  401 LDWKVAQEKVPWDIVLLLGGGFAMAKGCETSGLSKWMAAQMEPLRLVKPAVITLILSCLVAMTTECTSNVATTTLFLPIFASMARSIGIHPLYVMIPCTMSASLAFMLPVATPPNAIVFAYGHLRVVDMMKTGLIMNFVGILSVFLSVNTWGRAMFNLD 559          
BLAST of CF835359 vs. ExPASy Swiss-Prot
Match: S13A2_RAT (Solute carrier family 13 member 2 OS=Rattus norvegicus GN=Slc13a2 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 7.372e-27
Identity = 63/151 (41.72%), Postives = 92/151 (60.93%), Query Frame = -3
Query:  251 KLPXNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTD 703
            K+P NI++LLG GFA+A G   SGL++ L   L  L+  P  A A I+CL+ AI TE TSN ATTTL LP+L  +A+ + +HPL +M+P  + A  +F+LP  TP N + F+ G +++ DM + G  L I G+ A    + +    +F  D
Sbjct:  411 KMPWNIVILLGGGFALAKGSEQSGLSEWLGDKLTPLQHIPPSATAVILCLLIAIFTECTSNVATTTLFLPILASMAQAICLHPLYVMLPCTLAASLAFMLPVATPPNAIVFSFGGLKVSDMARAGFLLNIIGVLATTLSINSWSIPIFKLD 561          
BLAST of CF835359 vs. ExPASy Swiss-Prot
Match: S13A4_HUMAN (Solute carrier family 13 member 4 OS=Homo sapiens GN=SLC13A4 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 9.628e-27
Identity = 55/162 (33.95%), Postives = 99/162 (61.11%), Query Frame = -3
Query:  251 EKXMDWNKCKK-LPXNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTD 733
            E  + W   +K +P  I++L+G G+A+A G ++SGL+  +   +  L + P  A+  + C++ +I+TEF SN AT T+ LP+L  +++T+H++PL  ++P  +   F+ +LP G P N + F+ GH +I+DM+K GL + + G+  +   + T G  +F  D
Sbjct:  450 EPIITWKDFQKTMPWEIVILVGGGYALASGSKSSGLSTWIGNQMLSLSSLPPWAVTLLACILVSIVTEFVSNPATITIFLPILCSLSETLHINPLYTLIPVTMCISFAVMLPVGNPPNAIVFSYGHCQIKDMVKAGLGVNVIGLVIVMVAINTWGVSLFHLD 611          
The following BLAST results are available for this feature:
BLAST of CF835359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
TDT_ARATH3.054e-7380.23Tonoplast dicarboxylate transporter OS=Arabidopsis... [more]
S13A3_MOUSE1.696e-3140.88Solute carrier family 13 member 3 OS=Mus musculus ... [more]
S13A3_RAT8.415e-3140.25Solute carrier family 13 member 3 OS=Rattus norveg... [more]
S13A5_HUMAN1.215e-2940.88Solute carrier family 13 member 5 OS=Homo sapiens ... [more]
S13A3_HUMAN1.587e-2939.62Solute carrier family 13 member 3 OS=Homo sapiens ... [more]
S13A5_RAT6.031e-2942.11Solute carrier family 13 member 5 OS=Rattus norveg... [more]
SDCS_STAS11.755e-2837.58Sodium-dependent dicarboxylate transporter sdcS OS... [more]
S13A5_MOUSE5.644e-2738.99Solute carrier family 13 member 5 OS=Mus musculus ... [more]
S13A2_RAT7.372e-2741.72Solute carrier family 13 member 2 OS=Rattus norveg... [more]
S13A4_HUMAN9.628e-2733.95Solute carrier family 13 member 4 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01B19_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01B19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835359 ID=CF835359; Name=CF835359; organism=Citrus sinensis; type=EST; length=759bp
TTTATATTTTGACCTATATATGTTCAATAAAAGGGAAAAAACTCAATATG
GTGTGCTAACCACTAAGGGAAGCATTCATTAGGCACGCAAATATACAATA
GGCGTCTTTTCTTATAGGAAAAACTCAATATGGTGTGCAAACACTAGCAT
TGCTATAATTCCTATTCAGGGTCCCCCAATGCCTGTTACGGAGACTTGAT
TGAGAGAAACCTCCACAGTTTACAAGAGTTTGCAGCTACTGAACATCCCC
ATCTGTCCCAAAAACATAAGCACCAAGTGTAGGCATTAGAAAGGCCATAG
CAGCAATGCCAGCAATCTTAAGGGGCAGCCCTGTCTTGATCATATCTTGA
ATTTCGATGTGCCCGGTTGTGAATCCAACAATATTTGAAGGGGTTCCAGT
CGGCAACAAGAAAGAAAATTGTGCTCCAATTGCTCCAGGAACCATAAGAA
GCAATGGATGAACATGCATAGTTTTTGCTATTTGGATCAGAAGTGGAAGA
ACGAGAGTTGTTGTGGCATTATTTGATGTGAATTCAGTAATAATCGCGCT
AATCAGACATACGATAGGTGCAATGGCTAAATATGGCGCCGCCTCCAGGA
AATCCAATGCTTTTGACAGATCATCAGCAAGACCGCTAGTCCTGACTCCA
TCGGCTATAGCAAAGCCAGCCCCTAAAAGCAATATAATGTTCCNAGGTAG
CTTCTTGCATTTGTTCCAATCCATNCATTTTTCTCCTTTTTGCTTCATGC
TCGGAATTA
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