CF835373
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2) HSP 1 Score: 273.092 bits (697), Expect = 5.925e-73 Identity = 132/166 (79.52%), Postives = 143/166 (86.14%), Query Frame = 2 Query: 41 ERQNSNSTTSGV-KRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPT 535 E Q SNST S +R DPE ALY ELWHACAGPLVTVPR+ +RV+YFPQGHIEQVEASTNQ A+QQMP+YDLPSK+LCRVINV LKAE DTDE +AQ+TLLPE+NQDENA+EKE RF VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPT Sbjct: 36 EGQKSNSTRSAAAERALDPEAALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRVINVDLKAEADTDEVYAQITLLPEANQDENAIEKEAPLPPPPRFQVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPT 201
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2) HSP 1 Score: 227.254 bits (578), Expect = 3.729e-59 Identity = 114/155 (73.55%), Postives = 127/155 (81.94%), Query Frame = 2 Query: 86 GDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQ--DENAVEKE---XXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPT 535 G E AL+TELW ACAGPLVTVPR GE+V+YFPQGHIEQVEASTNQV +Q+M +Y+LP KILC V+NV+LKAEPDTDE +AQ+TLLPES Q D + E+E R VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPT Sbjct: 32 GGGEDALFTELWSACAGPLVTVPRVGEKVFYFPQGHIEQVEASTNQVGEQRMQLYNLPWKILCEVMNVELKAEPDTDEVYAQLTLLPESKQQEDNGSTEEEVPSAPAAGHVRPRVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPT 186
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 1.850e-58 Identity = 113/155 (72.90%), Postives = 126/155 (81.29%), Query Frame = 2 Query: 86 GDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQ--DENAVEKE---XXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPT 535 G E AL+TELW ACAGPLVTVPR GE+V+YFPQGHIEQVEASTNQV +Q+M +Y+LP KILC V+NV+LKAEPDTDE +AQ+TLLPE Q D + E+E R VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPT Sbjct: 32 GGGEDALFTELWSACAGPLVTVPRVGEKVFYFPQGHIEQVEASTNQVGEQRMQLYNLPWKILCEVMNVELKAEPDTDEVYAQLTLLPELKQQEDNGSTEEEVPSAPAAGHVRPRVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPT 186
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1) HSP 1 Score: 223.016 bits (567), Expect = 7.032e-58 Identity = 112/152 (73.68%), Postives = 123/152 (80.92%), Query Frame = 2 Query: 86 GDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEK--EXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPT 535 GDP LY ELWHACAGPLVTVPR G+ V+YFPQGHIEQVEAS NQVAD QM +YDLPSK+LCRV+NV+LKAE DTDE +AQV L+PE Q+E AVEK R V SFCKTLTASDTSTHGGFSVLRRHADECLPPLDM++ PPT Sbjct: 18 GDP---LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVADSQMRLYDLPSKLLCRVLNVELKAEQDTDEVYAQVMLMPEPEQNEMAVEKTTPTSGPVQARPPVRSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTQSPPT 166
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2) HSP 1 Score: 214.157 bits (544), Expect = 3.266e-55 Identity = 101/144 (70.14%), Postives = 120/144 (83.33%), Query Frame = 2 Query: 101 ALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532 AL ELWHACAGPLVT+PREGERVYYFP+GH+EQ+EAS +Q +QQMP ++LPSKILC+VIN+Q +AEP+TDE +AQ+TLLPE +Q E + + VHSFCKTLTASDTSTHGGFSVLRRHAD+CLPPLDMS+QPP Sbjct: 18 ALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKILCKVINIQRRAEPETDEVYAQITLLPELDQSE-PTSPDAPVQEPEKCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPP 160
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 2.765e-54 Identity = 109/157 (69.43%), Postives = 121/157 (77.07%), Query Frame = 2 Query: 104 LYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQ-MPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENA----------VEKEXXXXXXX--RFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPT 535 L+ ELW ACAGPLVTVP GERV+Y PQGHIEQVEASTNQVA+QQ P+Y+LP KI C+V+NV+LKAEPDTDE +AQ+TLLPE QD N VE+E R VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMS+ PPT Sbjct: 29 LFVELWRACAGPLVTVPAVGERVFYLPQGHIEQVEASTNQVAEQQGAPLYNLPWKIPCKVMNVELKAEPDTDEVYAQLTLLPEKQQDGNGSGNGNVSKDKVEEEEVVPPAATERPRVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQHPPT 185
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFG_ORYSJ (Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1) HSP 1 Score: 210.69 bits (535), Expect = 3.611e-54 Identity = 97/144 (67.36%), Postives = 121/144 (84.03%), Query Frame = 2 Query: 101 ALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532 ALY ELWHACAGPLVTVPR+GE VYYFPQGH+EQ+EAST+Q DQ +P+++LPSKILC+V+NV+L+AE D+DE +AQ+ L PE++Q+E + + +VHSFCKTLTASDTSTHGGFSVLRRHA+ECLPPLDM++ PP Sbjct: 22 ALYRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFNLPSKILCKVVNVELRAETDSDEVYAQIMLQPEADQNE-LTSPKPEPHEPEKCNVHSFCKTLTASDTSTHGGFSVLRRHAEECLPPLDMTQNPP 164
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFI_ORYSJ (Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 1.517e-52 Identity = 96/144 (66.67%), Postives = 116/144 (80.56%), Query Frame = 2 Query: 101 ALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532 AL+ ELWHACAGPLVTVP+ GERVYYFPQGH+EQ+EASTNQ DQ +P+++LPSKILC V+NV+L+AE D+DE +AQ+ L PE++Q E + + HSFCKTLTASDTSTHGGFSVLRRHA+ECLP LDMS+ PP Sbjct: 20 ALFRELWHACAGPLVTVPKRGERVYYFPQGHMEQLEASTNQQLDQYLPMFNLPSKILCSVVNVELRAEADSDEVYAQIMLQPEADQSE-LTSLDPELQDLEKCTAHSFCKTLTASDTSTHGGFSVLRRHAEECLPQLDMSQNPP 162
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFK_ARATH (Auxin response factor 11 OS=Arabidopsis thaliana GN=ARF11 PE=2 SV=3) HSP 1 Score: 184.882 bits (468), Expect = 2.122e-46 Identity = 94/152 (61.84%), Postives = 114/152 (75.00%), Query Frame = 2 Query: 83 VGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQ-VADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPT 535 +G + LYTELW ACAGPLV VPR GERV+YFPQGH+EQ+ ASTNQ V DQ++PV++LP KILCRV++V LKAE +TDE +AQ+TL PE +Q E + + V SF K LTASDTSTHGGFSVLR+HA ECLP LDM++ PT Sbjct: 32 LGSNDDELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPPKILCRVLSVTLKAEHETDEVYAQITLQPEEDQSE-PTSLDPPLVEPAKPTVDSFVKILTASDTSTHGGFSVLRKHATECLPSLDMTQPTPT 182
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFI_ARATH (Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9 PE=2 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 6.827e-45 Identity = 89/145 (61.38%), Postives = 106/145 (73.10%), Query Frame = 2 Query: 104 LYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQM-PVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPT 535 LY ELW CAGPLV VP+ ERVYYFPQGH+EQ+EAST QV M P++ LP KILC V+NV L+AE DTDE +AQ+TL+P + + + + R VHSF K LTASDTSTHGGFSVLR+HA ECLPPLDM++Q PT Sbjct: 9 LYDELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQVDLNTMKPLFVLPPKILCNVMNVSLQAEKDTDEVYAQITLIPVGTEVDEPMSPDPSPPELQRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPT 153 The following BLAST results are available for this feature:
BLAST of CF835373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835373 ID=CF835373; Name=CF835373; organism=Citrus sinensis; type=EST; length=537bpback to top |