CF835390

Overview
NameCF835390
Unique NameCF835390
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length362
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835390 vs. ExPASy Swiss-Prot
Match: LBD38_ARATH (LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.701e-32
Identity = 65/87 (74.71%), Postives = 73/87 (83.91%), Query Frame = 3
Query:  102 MSCNGCTVLRKGCRENCMLRQSIQWIGTPPAQANATVFDAQLFGRAGLMSFISAVPETQRPSLFHSLVYEAVGTTVNPVSGAVRLLW 362
            MSCNGC VLRKGC ENC+LR  IQWI +P AQ +ATVF A+ FGRAGLMSFISAVPE+Q P+LF SL+YEA G TVNPV+GAV LLW
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQCPALFQSLLYEACGRTVNPVNGAVGLLW 87          
BLAST of CF835390 vs. ExPASy Swiss-Prot
Match: LBD37_ARATH (LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.314e-31
Identity = 63/87 (72.41%), Postives = 73/87 (83.91%), Query Frame = 3
Query:  102 MSCNGCTVLRKGCRENCMLRQSIQWIGTPPAQANATVFDAQLFGRAGLMSFISAVPETQRPSLFHSLVYEAVGTTVNPVSGAVRLLW 362
            MSCNGC VLRKGC ENC+LR  IQWI T  AQ +ATVF A+ FGRAGLMSFISAVP++QRP+LF SL+YEA G TVNPV+GA+ +LW
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQRPALFQSLLYEACGRTVNPVNGAIGMLW 87          
BLAST of CF835390 vs. ExPASy Swiss-Prot
Match: LBD39_ARATH (LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.739e-29
Identity = 59/87 (67.82%), Postives = 71/87 (81.61%), Query Frame = 3
Query:  102 MSCNGCTVLRKGCRENCMLRQSIQWIGTPPAQANATVFDAQLFGRAGLMSFISAVPETQRPSLFHSLVYEAVGTTVNPVSGAVRLLW 362
            MSCNGC VLRKGC E C+LR  +QWI +  +Q +ATVF A+ FGRAGLMSFIS+VPE QRP+LF SL++EA G TVNPV+GAV +LW
Sbjct:    1 MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQRPALFQSLLFEACGRTVNPVNGAVGMLW 87          
BLAST of CF835390 vs. ExPASy Swiss-Prot
Match: LBD40_ARATH (LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.399e-25
Identity = 51/89 (57.30%), Postives = 67/89 (75.28%), Query Frame = 3
Query:   96 INMSCNGCTVLRKGCRENCMLRQSIQWIGTPPAQANATVFDAQLFGRAGLMSFISAVPETQRPSLFHSLVYEAVGTTVNPVSGAVRLLW 362
            + MSCNGC VLRKGC ENC +R  +QWI +  +QANATVF A+ +GRAGLM+ ++  P+  RP++F SL+YEA G  VNP+ G+V LLW
Sbjct:    1 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLW 89          
BLAST of CF835390 vs. ExPASy Swiss-Prot
Match: LBD41_ARATH (LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.093e-25
Identity = 52/89 (58.43%), Postives = 66/89 (74.16%), Query Frame = 3
Query:   96 INMSCNGCTVLRKGCRENCMLRQSIQWIGTPPAQANATVFDAQLFGRAGLMSFISAVPETQRPSLFHSLVYEAVGTTVNPVSGAVRLLW 362
            + MSCNGC VLRKGC E+C +R  + WI +P AQANATVF A+ +GRAGLM+ I+A P   RP +F SL++EA G  VNP+ G+V LLW
Sbjct:    1 MRMSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLRPGIFRSLLHEACGRIVNPIYGSVGLLW 89          
BLAST of CF835390 vs. ExPASy Swiss-Prot
Match: LBD42_ARATH (LOB domain-containing protein 42 OS=Arabidopsis thaliana GN=LBD42 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.008e-23
Identity = 47/89 (52.81%), Postives = 67/89 (75.28%), Query Frame = 3
Query:   96 INMSCNGCTVLRKGCRENCMLRQSIQWIGTPPAQANATVFDAQLFGRAGLMSFISAVPETQRPSLFHSLVYEAVGTTVNPVSGAVRLLW 362
            + +SCNGC VLRKGC ++C +R  +QWI +  +QANAT+F A+ +GRAGL++ I + P+  RP++F SL+YEA G  VNPV G+V L+W
Sbjct:    1 MRISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDHLRPAIFRSLLYEACGRIVNPVDGSVGLMW 89          
The following BLAST results are available for this feature:
BLAST of CF835390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LBD38_ARATH7.701e-3274.71LOB domain-containing protein 38 OS=Arabidopsis th... [more]
LBD37_ARATH1.314e-3172.41LOB domain-containing protein 37 OS=Arabidopsis th... [more]
LBD39_ARATH2.739e-2967.82LOB domain-containing protein 39 OS=Arabidopsis th... [more]
LBD40_ARATH2.399e-2557.30LOB domain-containing protein 40 OS=Arabidopsis th... [more]
LBD41_ARATH4.093e-2558.43LOB domain-containing protein 41 OS=Arabidopsis th... [more]
LBD42_ARATH1.008e-2352.81LOB domain-containing protein 42 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01C15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835390 ID=CF835390; Name=CF835390; organism=Citrus sinensis; type=EST; length=362bp
CCAATCCACTCTTTATGCTTTCTTTATAATTATTTATTTTATTTAATTTT
TACTTTTTGCTTCTGTTTTGTATGACCTGTGCTGGGCGAAAAAAAATCAA
CATGAGTTGCAATGGGTGTACAGTTCTGAGAAAAGGCTGCAGAGAAAACT
GCATGCTTCGTCAAAGCATTCAATGGATCGGCACCCCACCAGCTCAAGCA
AACGCCACCGTTTTTGATGCCCAGCTCTTCGGCCGCGCCGGCCTCATGTC
CTTCATCTCCGCCGTCCCCGAAACCCAACGACCCTCATTGTTTCACTCGC
TGGTATATGAAGCGGTGGGAACAACAGTGAACCCAGTGAGCGGCGCCGTG
AGGCTTCTGTGG
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