CF835397

Overview
NameCF835397
Unique NameCF835397
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2325 contig Csv1_Contig2325:77..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 6.348e-75
Identity = 136/143 (95.10%), Postives = 142/143 (99.30%), Query Frame = 2 
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 430
            PGDNVGFNVKNVAVKDLKRGFVASNSKDDPA+EAANFTSQVIIMNHPGQI NGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIKSVEKKDP
Sbjct:  292 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434
[Close]
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 278.485 bits (711), Expect = 2.412e-74
Identity = 136/143 (95.10%), Postives = 142/143 (99.30%), Query Frame = 2 
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 430
            PGDNVGFNVKNVAVKDLKRG+VASNSKDDPA+EAA+FTSQVIIMNHPGQI NGYAPVLDCHTSHIAVKF+ELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIK+VEKKDP
Sbjct:  292 PGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 434
[Close]
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.197e-73
Identity = 135/143 (94.41%), Postives = 140/143 (97.90%), Query Frame = 2 
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 430
            PGDNVGFNVKNVAVKDLKRG+VAS SKDDPA+EAA+FTSQVIIMNHPGQI NGYAPVLDCHTSHIAVKF+ELVTKIDRRSGKELEKEPKFLKNGDAGMVKM+PTKPMVVETFS YPPLGRFAVRDMRQTVAVGVIKSVEKKDP
Sbjct:  292 PGDNVGFNVKNVAVKDLKRGYVASGSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434
[Close]
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.667e-73
Identity = 135/143 (94.41%), Postives = 139/143 (97.20%), Query Frame = 2 
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 430
            PGDNVGFNVKNVAVKDLKRG VASNSKDDPA+EAANFTSQVIIMNHPGQI NGYAPVLDCHTSHIAVKF+E++TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETFS YPPLGRFAVRDMRQTVAVGVIKSVEKKDP
Sbjct:  292 PGDNVGFNVKNVAVKDLKRGIVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434
[Close]
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 274.633 bits (701), Expect = 3.483e-73
Identity = 133/143 (93.01%), Postives = 141/143 (98.60%), Query Frame = 2 
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 430
            PGDNVGFNVKNVAVKDLKRG+VASNSKDDPA+EAANFT+QVII+NHPGQI NGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIK+VEKKDP
Sbjct:  292 PGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIINHPGQIGNGYAPVLDCHTSHIAVKFAELMTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 434
[Close]
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 4.549e-73
Identity = 133/143 (93.01%), Postives = 140/143 (97.90%), Query Frame = 2 
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 430
            PGDNVGFNVKNVAVKDLKRG+VASNSKDDPA+ AANFTSQVIIMNHPGQI NGYAPVLDCHTSHIAVKFSE++TKIDRRSGKE+EKEPKFLKNGDAGMVKM PTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIKSV+KKDP
Sbjct:  292 PGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDP 434
[Close]
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.014e-72
Identity = 132/143 (92.31%), Postives = 141/143 (98.60%), Query Frame = 2 
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 430
            PGDNVGFNVKNVAVKDLKRGFVASNSKDDPA+ AA+FTSQVIIMNHPGQI NGYAPVLDCHTSHIAVKF+E++TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIK+V+KKDP
Sbjct:  292 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVDKKDP 434
[Close]
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.324e-72
Identity = 133/143 (93.01%), Postives = 138/143 (96.50%), Query Frame = 2 
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 430
            PGDNVGFNVKNVAVKDLKRG+VASNSKDDPA+EAANFT+QVIIMNHPGQI NGYAPVLDCHTSHIAVKF+E+ TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETF  YPPLGRFAVRDMRQTVAVGVIKSVEKKDP
Sbjct:  292 PGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFMSYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434
[Close]
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.258e-72
Identity = 134/143 (93.71%), Postives = 138/143 (96.50%), Query Frame = 2 
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 430
            PGDNVGFNVKNVAVKDLKRGFVASNSKDDPA+EAANFTSQVIIMNHPGQI NGYAPVLDCHTSHIAVKF+ELVTKIDRRSGKELE  PKFLKNGDAG+VKMIPTKPMVVETF+ YPPLGRFAVRDMRQTVAVGVIK VEKKDP
Sbjct:  292 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEALPKFLKNGDAGIVKMIPTKPMVVETFATYPPLGRFAVRDMRQTVAVGVIKGVEKKDP 434
[Close]
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.258e-72
Identity = 132/143 (92.31%), Postives = 139/143 (97.20%), Query Frame = 2 
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 430
            PGDNV FNVKNVAVKDLK G VASNSKDDPA++AANFTSQVIIMNHPGQI NGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIKSVEKKDP
Sbjct:  292 PGDNVRFNVKNVAVKDLKHGLVASNSKDDPAKDAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434
The following BLAST results are available for this feature:
BLAST of CF835397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_VICFA6.348e-7595.10Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_ORYSJ2.412e-7495.10Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_MAIZE1.197e-7394.41Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_MANES2.667e-7394.41Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A_SOYBN3.483e-7393.01Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_ARATH4.549e-7393.01Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_TOBAC1.014e-7292.31Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A2_DAUCA1.324e-7293.01Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]
EF1A_WHEAT2.258e-7293.71Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]
EF1A_PEA2.258e-7292.31Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835397 ID=CF835397; Name=CF835397; organism=Citrus sinensis; type=EST; length=702bp
TCCGGGTGACAATGTTGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATC
TCAAGCGTGGTTTTGTTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAA
GCTGCCAACTTCACTTCACAGGTCATCATCATGAACCATCCTGGCCAAAT
TGAAAATGGATATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCTG
TCAAGTTTTCTGAGCTTGTGACCAAGATTGACAGGCGATCTGGCAAGGAG
CTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGAGATGCCGGAATGGTTAA
GATGATTCCCACCAAGCCCATGGTTGTTGAGACCTTCTCCGACTACCCAC
CCCTTGGTCGTTTTGCTGTTAGGGACATGCGTCAGACTGTAGCTGTTGGT
GTGATCAAGAGTGTTGAAAAGAAGGATCCATCGGGTGCCAAGGTCACCAA
GTCTGCTGCCAAGAAGAAGTGAGGAGTTTTTTGGGATCTATCTGCTATAG
TTAGCTTTTATTTTCTCTGTTTATGCTATTTTTGTCATGTTTTAGTTTGT
TTTACGGTAGACTTCATTTTAATTCTCTGAATTTGGTTTTATATCATTGA
GTTTTTTTTGGTAAGTTGATAAACCAGTTTTNNNCCGTCAAACATTTTGT
TTCAAGATTAGCCGTTAGTGCTCGATTTTGAAAATTTAGTCGGTGCTCAT
AT
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