CF835398

Overview
NameCF835398
Unique NameCF835398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1818 contig Csv1_Contig1818:14..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835398 vs. ExPASy Swiss-Prot
Match: SMD1_MOUSE (Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus GN=Snrpd1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.348e-21
Identity = 55/98 (56.12%), Postives = 66/98 (67.35%), Query Frame = -2 
Query:  250 MKLVRFLMKLNNETVSIELKXXXXXXXXXXXVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSXXXXXXXXXXXLRVKPKK--PIAGR 537
            MKLVRFLMKL++ETV+IELK           VD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY+ILPDS            +VK KK   +AGR
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGR 98
[Close]
BLAST of CF835398 vs. ExPASy Swiss-Prot
Match: SMD1_MACFA (Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.348e-21
Identity = 55/98 (56.12%), Postives = 66/98 (67.35%), Query Frame = -2 
Query:  250 MKLVRFLMKLNNETVSIELKXXXXXXXXXXXVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSXXXXXXXXXXXLRVKPKK--PIAGR 537
            MKLVRFLMKL++ETV+IELK           VD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY+ILPDS            +VK KK   +AGR
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGR 98
[Close]
BLAST of CF835398 vs. ExPASy Swiss-Prot
Match: SMD1_HUMAN (Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens GN=SNRPD1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.348e-21
Identity = 55/98 (56.12%), Postives = 66/98 (67.35%), Query Frame = -2 
Query:  250 MKLVRFLMKLNNETVSIELKXXXXXXXXXXXVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSXXXXXXXXXXXLRVKPKK--PIAGR 537
            MKLVRFLMKL++ETV+IELK           VD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY+ILPDS            +VK KK   +AGR
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGR 98
[Close]
BLAST of CF835398 vs. ExPASy Swiss-Prot
Match: SMD1_BOVIN (Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.348e-21
Identity = 55/98 (56.12%), Postives = 66/98 (67.35%), Query Frame = -2 
Query:  250 MKLVRFLMKLNNETVSIELKXXXXXXXXXXXVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSXXXXXXXXXXXLRVKPKK--PIAGR 537
            MKLVRFLMKL++ETV+IELK           VD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY+ILPDS            +VK KK   +AGR
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGR 98
[Close]
BLAST of CF835398 vs. ExPASy Swiss-Prot
Match: SMD1_SCHPO (Probable small nuclear ribonucleoprotein Sm D1 OS=Schizosaccharomyces pombe GN=smd1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.059e-20
Identity = 52/91 (57.14%), Postives = 60/91 (65.93%), Query Frame = -2 
Query:  265 MKLVRFLMKLNNETVSIELKXXXXXXXXXXXVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSXXXXXXXXXXXLRVKPKK 537
            MKLVRFLMKL NETVSIELK           VD+ MNTHLK VK+T+KG+ PV ++ LS+RGNNIRYYILPDS            + K KK
Sbjct:    1 MKLVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSIRGNNIRYYILPDSLPLDTLLIDDSTKPKQKK 91
[Close]
BLAST of CF835398 vs. ExPASy Swiss-Prot
Match: SMD1_DROME (Probable small nuclear ribonucleoprotein Sm D1 OS=Drosophila melanogaster GN=snRNP69D PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.059e-20
Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = -2 
Query:  250 MKLVRFLMKLNNETVSIELKXXXXXXXXXXXVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSXXXXXXXXXXXLRVKPKKPIAGR 537
            MKLVRFLMKL++ETV+IELK           VD++MNTHLK+V++T+K ++PV+L+ LS+RGNNIRY+ILPDS            + K KK  +GR
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGNNIRYFILPDSLPLETLLIDDTPKSKTKKKDSGR 96
[Close]
BLAST of CF835398 vs. ExPASy Swiss-Prot
Match: SMD1_CAEEL (Probable small nuclear ribonucleoprotein Sm D1 OS=Caenorhabditis elegans GN=snr-3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.674e-18
Identity = 49/95 (51.58%), Postives = 59/95 (62.11%), Query Frame = -2 
Query:  253 MKLVRFLMKLNNETVSIELKXXXXXXXXXXXVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSXXXXXXXXXXXLRVKPKKPIAG 537
            MKLVRFLMKL++ETV+IELK           VD++MNTHL+ V +T+K K PV LD LS+RGNNIRY ILPD             R K +   AG
Sbjct:    1 MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGNNIRYIILPDPLALDTLLIDDEPRKKARAARAG 95
The following BLAST results are available for this feature:
BLAST of CF835398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SMD1_MOUSE9.348e-2156.12Small nuclear ribonucleoprotein Sm D1 OS=Mus muscu... [more]
SMD1_MACFA9.348e-2156.12Small nuclear ribonucleoprotein Sm D1 OS=Macaca fa... [more]
SMD1_HUMAN9.348e-2156.12Small nuclear ribonucleoprotein Sm D1 OS=Homo sapi... [more]
SMD1_BOVIN9.348e-2156.12Small nuclear ribonucleoprotein Sm D1 OS=Bos tauru... [more]
SMD1_SCHPO6.059e-2057.14Probable small nuclear ribonucleoprotein Sm D1 OS=... [more]
SMD1_DROME6.059e-2052.08Probable small nuclear ribonucleoprotein Sm D1 OS=... [more]
SMD1_CAEEL9.674e-1851.58Probable small nuclear ribonucleoprotein Sm D1 OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01C21_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835398 ID=CF835398; Name=CF835398; organism=Citrus sinensis; type=EST; length=622bp
TTTTTTTTTTTTTTTTTGGGTACCATTATAAGAAAGCAAAACCAAGGAGT
GAAGCTTCGAATTCTAGATCAAGTCACCCTGGTGGAACAATATTAAAAGA
TAACATCACTCCTTTCCATGTCCCCACACACTCCTACAACAAAGATGTTT
ACATGACCAGGTGCTCCAAAAATTATAACCAGTGCAACATATCTAACGAC
CACGGCCACGCCCGCGACCGCGTCCACGGCCCCGACCACGTCCCACCGGC
CTCCCAGCAATCGGCTTCTTTGGCTTGACCCTAAGTGTCTCTTCAACCAG
CAATGTTTCAAGATTCAAGCTGTCAGGAAGGATATAATAACGGATATTGT
TACCCCTCACACTTAGGTGATCCAAGTTCACTGGATTTTTCCCCTTCAGC
GTAAGTTTCACTGTTTTCAAATGTGTGTTCATACTGATATCCACACCTGT
GATGGTTCCGTGAACAATGGTTCCGGTCTTCAGTTCAATCGACACGGTCT
CATTGTTCAACTTCATCAAGAACCTGACGAGCTTCATTTTGGTGAGCAAG
ACGAAAGCTAGGGCTTTGAAACAAAAGCGGAGAGAAAAAGATTCTCTGCT
ACTAGGAAGCGGGAACGTTGCC
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