CF835399

Overview
NameCF835399
Unique NameCF835399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1818 contig Csv1_Contig1818:13..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835399 vs. ExPASy Swiss-Prot
Match: SMD1_DROME (Probable small nuclear ribonucleoprotein Sm D1 OS=Drosophila melanogaster GN=snRNP69D PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.534e-34
Identity = 67/96 (69.79%), Postives = 88/96 (91.67%), Query Frame = 3
Query:   87 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR 374
            MKLVRFLMKL++ETV+IELKNGT +HGTITGVD++MNTHLK+V++T+K ++PV+L+ LS+RGNNIRY+ILPDSL LETLL+++TP+ K KK  +GR
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGNNIRYFILPDSLPLETLLIDDTPKSKTKKKDSGR 96          
BLAST of CF835399 vs. ExPASy Swiss-Prot
Match: SMD1_MOUSE (Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus GN=Snrpd1 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.802e-33
Identity = 70/94 (74.47%), Postives = 82/94 (87.23%), Query Frame = 3
Query:   87 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 368
            MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94          
BLAST of CF835399 vs. ExPASy Swiss-Prot
Match: SMD1_MACFA (Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.802e-33
Identity = 70/94 (74.47%), Postives = 82/94 (87.23%), Query Frame = 3
Query:   87 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 368
            MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94          
BLAST of CF835399 vs. ExPASy Swiss-Prot
Match: SMD1_HUMAN (Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens GN=SNRPD1 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.802e-33
Identity = 70/94 (74.47%), Postives = 82/94 (87.23%), Query Frame = 3
Query:   87 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 368
            MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94          
BLAST of CF835399 vs. ExPASy Swiss-Prot
Match: SMD1_BOVIN (Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.802e-33
Identity = 70/94 (74.47%), Postives = 82/94 (87.23%), Query Frame = 3
Query:   87 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 368
            MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94          
BLAST of CF835399 vs. ExPASy Swiss-Prot
Match: SMD1_SCHPO (Probable small nuclear ribonucleoprotein Sm D1 OS=Schizosaccharomyces pombe GN=smd1 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.390e-32
Identity = 67/91 (73.63%), Postives = 80/91 (87.91%), Query Frame = 3
Query:   87 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKK 359
            MKLVRFLMKL NETVSIELKNGTIVHGTIT VD+ MNTHLK VK+T+KG+ PV ++ LS+RGNNIRYYILPDSL L+TLL++++ + K KK
Sbjct:    1 MKLVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSIRGNNIRYYILPDSLPLDTLLIDDSTKPKQKK 91          
BLAST of CF835399 vs. ExPASy Swiss-Prot
Match: SMD1_CAEEL (Probable small nuclear ribonucleoprotein Sm D1 OS=Caenorhabditis elegans GN=snr-3 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.879e-29
Identity = 63/95 (66.32%), Postives = 77/95 (81.05%), Query Frame = 3
Query:   87 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 371
            MKLVRFLMKL++ETV+IELKNGT V GTI GVD++MNTHL+ V +T+K K PV LD LS+RGNNIRY ILPD L L+TLL+++ PR K +   AG
Sbjct:    1 MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGNNIRYIILPDPLALDTLLIDDEPRKKARAARAG 95          
BLAST of CF835399 vs. ExPASy Swiss-Prot
Match: SMD1_YEAST (Small nuclear ribonucleoprotein Sm D1 OS=Saccharomyces cerevisiae GN=SMD1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.804e-14
Identity = 49/110 (44.55%), Postives = 61/110 (55.45%), Query Frame = 3
Query:   87 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK---------------------GKNP------VNLDHLSVRGNNIRYYILPDSLNLETLLVEE 335
            MKLV FL KL NE V+IELKNGT V GT+  V   MN  L  VKLTL                      G+ P       +L ++++RGN IR  ILPDSLNL++LLV++
Sbjct:    1 MKLVNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKLTLPQPRLNKLNSNGIAMASLYLTGGQQPTASDNIASLQYINIRGNTIRQIILPDSLNLDSLLVDQ 110          
The following BLAST results are available for this feature:
BLAST of CF835399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SMD1_DROME2.534e-3469.79Probable small nuclear ribonucleoprotein Sm D1 OS=... [more]
SMD1_MOUSE2.802e-3374.47Small nuclear ribonucleoprotein Sm D1 OS=Mus muscu... [more]
SMD1_MACFA2.802e-3374.47Small nuclear ribonucleoprotein Sm D1 OS=Macaca fa... [more]
SMD1_HUMAN2.802e-3374.47Small nuclear ribonucleoprotein Sm D1 OS=Homo sapi... [more]
SMD1_BOVIN2.802e-3374.47Small nuclear ribonucleoprotein Sm D1 OS=Bos tauru... [more]
SMD1_SCHPO1.390e-3273.63Probable small nuclear ribonucleoprotein Sm D1 OS=... [more]
SMD1_CAEEL1.879e-2966.32Probable small nuclear ribonucleoprotein Sm D1 OS=... [more]
SMD1_YEAST3.804e-1444.55Small nuclear ribonucleoprotein Sm D1 OS=Saccharom... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01C21_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835399 ID=CF835399; Name=CF835399; organism=Citrus sinensis; type=EST; length=623bp
ACGCTACGTTCCCGCTTCCTAGTAGCAGAGAATCTTCTTCTCTCCGCTTT
TGCTTCAAAGCCCTAGCTTTCGTCTTGCTCACCAAAATGAAGCTCGTCAG
GTTCTTGATGAAGTTGAACAATGAGACCGTGTCGATTGAACTGAAGAACG
GAACCATTGTTCACGGAACCATCACAGGTGTGGATATCAGTATGAACACA
CATTTGAAAACAGTGAAACTTACGCTGAAGGGGAAAAATCCAGTGAACTT
GGATCACCTAAGTGTGAGGGGTAACAATATCCGTTATTATATCCTTCCTG
ACAGCTTGAATCTTGAAACATTGCTGGTTGAAGAGACACCTAGGGTCAAG
CCAAAGAAGCCGACTGCTGGGAGGCCGGTGGGACGTGGTCGGGGCCGTGG
ACGCGGTCGCGGGCGTGGCCGTGGTCGTTAGATATGTTGCACTGGTTATA
ATTTTTGGAGCACCTGGTCATGTAAACATCTTTGTTGTAGGAGTGTGTGG
GGACATGGAAAGGAGTGATGTTATCTTTTAATATTGTTCCACCAGGGTGA
CTTGATCTAGAATTCGAAGCTTCACTCCTTTGTTTTTGCTTTCTTATAAT
GGTACCCAAAAAAAAAAAAAAAA
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