CF835401

Overview
NameCF835401
Unique NameCF835401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835401 vs. ExPASy Swiss-Prot
Match: E134_MAIZE (Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.996e-36
Identity = 85/195 (43.59%), Postives = 116/195 (59.49%), Query Frame = 2
Query:   80 QCCANPPTLNPN----SGAGHV--EKLGGLNAYVTGSPDSKLAVLLISDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHGDPYVADGGKPLQEWIKDHGVDKGFEEAKPVIQALKSKGITAIGAAGFCWGAKVVVQLAKREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEIDRLSPPALVKEFEEALNAKSGV 646
            QC  NPP  + +    + AG V  +  GGL AYV+G+  S  AV+L SDV+GYEAP LR++ DKVA AG++V VPDF  GD    D  K   EW++ H   K  E+AKP+  ALK +G  ++   G+CWG K+ V++ K   ++A  L HP  VT DD+K V+ P+ ILGA+ D  +PP  V  F   L  +  V
Sbjct:   28 QCLDNPPDRSIHGRQLAEAGEVVHDLPGGLRAYVSGAASSSRAVVLASDVFGYEAPLLRQIVDKVAKAGYFVVVPDFLKGD--YLDDKKNFTEWLEAHSPVKAAEDAKPLFAALKKEG-KSVAVGGYCWGGKLSVEVGKTSDVKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVLRERHEV 219          
BLAST of CF835401 vs. ExPASy Swiss-Prot
Match: CMBL_XENTR (Carboxymethylenebutenolidase homolog OS=Xenopus tropicalis GN=cmbl PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.631e-21
Identity = 72/222 (32.43%), Postives = 108/222 (48.65%), Query Frame = 2
Query:  125 GHVEKLGGLNAYVTGSPDSK-LAVLLISDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHG-DPYVADGGK-PLQEWIKDHGVDKGFEEAKPVIQALKSK-GITAIGAAGFCWGAKVVVQL-AKREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEIDRLSPPALVKEFEEALNAKSGVDSFVKIFPKVAHGWTVRYNVEDETAVKA-AEETHHNLLEWFAK 772
            G   ++  + AYV+    S   AV+++ D++G++ PN R +AD + A G+    PDFF G +P+     +    EW++     K  +E   V++ LK +  +  IG  GFCWG  V   L  K   ++A V  +     V+D   +  P   + AE+D + P   V   EE L   S VD  VK+FPK  HG+  R N +     K   EE   N+LEW  K
Sbjct:   22 GQEVQIEHIKAYVSKPHSSTDKAVIVVQDIFGWQLPNTRFMADLLTAHGYITICPDFFVGQEPWKPSNDRSTFTEWLQTRQATKVEKEINVVLKYLKEQCHVKKIGVIGFCWGGVVTHHLMLKYPELKAGVSFYGIIRDVEDRYNLLNPTLFIFAEMDHVIPLEQVSLLEEKLKVHSKVDFQVKVFPKQTHGFVHRKNEDINPEDKPFIEEARKNMLEWLHK 243          
BLAST of CF835401 vs. ExPASy Swiss-Prot
Match: CMBL_MOUSE (Carboxymethylenebutenolidase homolog OS=Mus musculus GN=Cmbl PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.194e-21
Identity = 72/224 (32.14%), Postives = 108/224 (48.21%), Query Frame = 2
Query:  119 GAGHVEKLGGLNAYVTGSP-DSKLAVLLISDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHG-DPYVADGG-KPLQEWIKDHGVDKGFEEAKPVIQALKSK-GITAIGAAGFCWGAKVVVQ-LAKREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEIDRLSPPALVKEFEEALNAKSGVDSFVKIFPKVAHGWTVRYNVEDETAVKA-AEETHHNLLEWFAK 772
            G GH  ++  + AYVT SP D+  AV+++ D++G++ PN R +AD +A  G+   VPDFF G +P+   G       W+K     K   E   V++ L+ +     IG  GFCWG  VV Q +     I+A V ++      +D+  ++ P   + AE D + P   V    + L     V+  VK F    HG+  R   +   A K   EE   NL+EW  K
Sbjct:   20 GMGHEVQVEHIKAYVTRSPVDAGKAVIVVQDIFGWQLPNTRYMADMIARNGYTTIVPDFFVGQEPWDPAGDWSTFPAWLKSRNARKVNREVDAVLRYLRQQCHAQKIGIVGFCWGGVVVHQVMTAYPDIRAGVSVYGIIRDSEDVYNLKNPTLFIFAENDTVIPLEQVSTLTQKLKEHCIVNYQVKTFSGQTHGFVHRKREDCSPADKPYIEEARRNLIEWLNK 243          
BLAST of CF835401 vs. ExPASy Swiss-Prot
Match: CMBL_XENLA (Carboxymethylenebutenolidase homolog OS=Xenopus laevis GN=cmbl PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.848e-20
Identity = 69/217 (31.80%), Postives = 105/217 (48.39%), Query Frame = 2
Query:  149 LNAYVTGSPDSK-LAVLLISDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHGDP--YVADGGKPLQEWIKDHGVDKGFEEAKPVIQALKSK-GITAIGAAGFCWGAKVVVQL-AKREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEIDRLSPPALVKEFEEALNAKSGVDSFVKIFPKVAHGWTVR----YNVEDETAVKAAEETHHNLLEWFAK 772
            + AYV+    S   AV+++ D++G++ PN R +AD + A G+    PDFF G      ++      EW++     K  +E   V++ LK +  +  IG  GFCWG  V   L  K   ++A V  +     V+D   +  P   + AEID + P   V   E+ L   S VD  +K+FPK  HG+  R     N ED+  +   EE   ++LEW  K
Sbjct:   30 IKAYVSKPHSSTDKAVIVVQDIFGWQLPNTRFMADLLTAHGYITICPDFFVGQESWKPSNDWSTFTEWLQTRQATKVEKEMNVVLKYLKEQCHVKKIGVIGFCWGGVVTHHLMLKYPELKAGVSFYGIIRDVEDRYNLLNPTLFIFAEIDHVIPLEQVSLLEQKLKVHSKVDFQIKVFPKQTHGFVHRKKEDINPEDKPFI---EEARKDMLEWLQK 243          
BLAST of CF835401 vs. ExPASy Swiss-Prot
Match: CMBL_HUMAN (Carboxymethylenebutenolidase homolog OS=Homo sapiens GN=CMBL PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.944e-20
Identity = 70/224 (31.25%), Postives = 107/224 (47.77%), Query Frame = 2
Query:  119 GAGHVEKLGGLNAYVTGSP-DSKLAVLLISDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHG-DPYVADGGKPL-QEWIKDHGVDKGFEEAKPVIQALKSK-GITAIGAAGFCWGAKVVVQL-AKREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEIDRLSPPALVKEFEEALNAKSGVDSFVKIFPKVAHGWTVRYNVEDETAVKA-AEETHHNLLEWFAK 772
            G G   ++  + AYVT SP D+  AV++I D++G++ PN R +AD ++  G+   VPDFF G +P+   G   +  EW+K     K   E   +++ LK +     IG  GFCWG   V  L  K    +A V ++      +DI  ++ P   + AE D + P   V    + L     V+  +K F    HG+  R   +   A K   +E   NL+EW  K
Sbjct:   20 GLGREVQVEHIKAYVTKSPVDAGKAVIVIQDIFGWQLPNTRYIADMISGNGYTTIVPDFFVGQEPWDPSGDWSIFPEWLKTRNAQKIDREISAILKYLKQQCHAQKIGIVGFCWGGTAVHHLMMKYSEFRAGVSVYGIVKDSEDIYNLKNPTLFIFAENDVVIPLKDVSLLTQKLKEHCKVEYQIKTFSGQTHGFVHRKREDCSPADKPYIDEARRNLIEWLNK 243          
BLAST of CF835401 vs. ExPASy Swiss-Prot
Match: AIM2_YEAST (Protein AIM2 OS=Saccharomyces cerevisiae GN=AIM2 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.168e-19
Identity = 71/236 (30.08%), Postives = 111/236 (47.03%), Query Frame = 2
Query:   77 PQCCANPPTLNPNSGAGHVEKLGGLNAYVTGSPDSKLAVLLI-SDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHGDPYVADGGKPLQEWIKDHGVDKGFEEAKPVIQALKSK-GITAIGAAGFCWGAKVVVQLAKRE--FIQAAVLLHPSFVTVDDIKGVE--VPLSILGAEIDRLSPPALVKEFEEALNAKSGVDSFVKIFPKVAHGWTVRYNVEDETAVKAAEETHHNLLEWF 766
            P  C      +  +  G  E++ GL+ Y  GS   K  V++I +DVYG +  N+   ADK A+AG+ V VPD   GD   +D       W + H  +   +     ++ LK +     IG  G+C+GAK  VQ    +     AA + HPSFV++++I+ ++   P+ I  AE D + P  L    EE L         + +F  VAHG+  R ++       A E+   + + WF
Sbjct:    6 PGKCCFEGVCHDGTPKGRREEIFGLDTYAAGSTSPKEKVIVILTDVYGNKFNNVLLTADKFASAGYMVFVPDILFGDAISSDKPIDRDAWFQRHSPEVTKKIVDGFMKLLKLEYDPKFIGVVGYCFGAKFAVQHISGDGGLANAAAIAHPSFVSIEEIEAIDSKKPILISAAEEDHIFPANLRHLTEEKLKDNHATYQ-LDLFSGVAHGFAARGDISIPAVKYAKEKVLLDQIYWF 240          
BLAST of CF835401 vs. ExPASy Swiss-Prot
Match: CMBL_PONAB (Carboxymethylenebutenolidase homolog OS=Pongo abelii GN=CMBL PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.526e-19
Identity = 70/224 (31.25%), Postives = 107/224 (47.77%), Query Frame = 2
Query:  119 GAGHVEKLGGLNAYVTGSP-DSKLAVLLISDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHG-DPYVADGGKPL-QEWIKDHGVDKGFEEAKPVIQALKSK-GITAIGAAGFCWGAKVVVQL-AKREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEIDRLSPPALVKEFEEALNAKSGVDSFVKIFPKVAHGWTVRYNVEDETAVKA-AEETHHNLLEWFAK 772
            G G   ++  + AYVT SP D+  AV++I D++G++ PN R +AD ++  G+   VPDFF G +P+   G   +  EW+K     K   E   +++ LK +     IG  GFCWG   V  L  K    +A V ++      +DI  ++ P   + AE D + P   V    + L     V+  +K F    HG+  R   +   A K   +E   NL+EW  K
Sbjct:   20 GLGREVQVEHIKAYVTKSPVDAGKAVIVIQDIFGWQLPNTRYMADMISGNGYTTIVPDFFVGQEPWDPSGDWSIFPEWLKTRNAQKIDREISAILKYLKQQCHAQKIGIVGFCWGGIAVHHLMMKYSEFRAGVSVYGIVKDSEDIYNLKNPTLFIFAENDVVIPLKDVSLLTQKLKEHCKVEYQIKTFSGQTHGFVHRKREDCSPADKPYIDEARRNLIEWLNK 243          
BLAST of CF835401 vs. ExPASy Swiss-Prot
Match: CMBL_RAT (Carboxymethylenebutenolidase homolog OS=Rattus norvegicus GN=Cmbl PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.571e-19
Identity = 70/224 (31.25%), Postives = 106/224 (47.32%), Query Frame = 2
Query:  119 GAGHVEKLGGLNAYVTGSP-DSKLAVLLISDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHG-DPYVADGG-KPLQEWIKDHGVDKGFEEAKPVIQALKSK-GITAIGAAGFCWGAKVVVQ-LAKREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEIDRLSPPALVKEFEEALNAKSGVDSFVKIFPKVAHGWTVRYNVEDETAVKA-AEETHHNLLEWFAK 772
            G G   ++  + AYVT SP D+  AV+++ D++G++  N R +AD +A  G+   VPDFF G +P+   G      EW+K     K   E   V++ LK +     IG  GFCWG  VV   +     ++A V ++      +D+  ++ P   + AE D + P   V    + L     V+  VK F    HG+  R   +   A K   EE   NL+EW  K
Sbjct:   20 GMGQEVQVEHIKAYVTRSPVDAGKAVIVVQDIFGWQLSNTRYMADMIAGNGYTTIVPDFFVGQEPWDPAGDWSTFPEWLKSRNARKINREVDAVLRYLKQQCHAQKIGIVGFCWGGIVVHHVMTTYPEVRAGVSVYGIIRDSEDVYNLKNPTLFIFAENDAVIPLEQVSILIQKLKEHCIVNYQVKTFSGQTHGFVHRKREDCSPADKPYIEEARRNLIEWLNK 243          
BLAST of CF835401 vs. ExPASy Swiss-Prot
Match: YB4E_SCHPO (Uncharacterized AIM2 family protein C30D10.14 OS=Schizosaccharomyces pombe GN=SPBC30D10.14 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.134e-13
Identity = 63/229 (27.51%), Postives = 102/229 (44.54%), Query Frame = 2
Query:  131 VEKLGGLNAYVTGSPDSKLAVLLISDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHGDPYVADGGKPL----QEWIKDH-----GVDKGFEEAKPVIQALKSKG--ITAIGAAGFCWGAKVVVQLAKREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEIDRLSPPALVKEFEEALN-----AKSGVDSFVKIFPKVAHGW-TVRYNVEDETAVKAAEETHHNLLEWF 766
            +E  GGL  YV GS  +   ++   D++G  +  +++ ADK+A  GF V +PDF  G P       P     Q+   D        +  + +   V++A+++       IG  GFCWGAKV+V              HPSF    D   V  P+  L ++ +      ++KE+EEA       AKS  ++F  +F    HGW   R ++ +    K  +E +  +  +F
Sbjct:   25 IENFGGLTTYVVGSTSNTRVLIGFMDIFGL-SDQIKEGADKLADDGFTVYLPDFLEGKPLPVTALPPKTPEDQKLCNDFFSTRISPNLHWPKLAKVVEAVRANHGPNVTIGTYGFCWGAKVLVTYPATIDFVGIASCHPSFPDSADAANVHCPVLFLCSKDE---DAKIIKEWEEAFKTNPAYAKSSFETFSDMF----HGWMAARADLSNPEQRKRFDEGYQKVSSFF 245          
BLAST of CF835401 vs. ExPASy Swiss-Prot
Match: YI7F_SCHPO (Uncharacterized AIM2 family protein C977.15 OS=Schizosaccharomyces pombe GN=SPAC977.15 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.059e-12
Identity = 64/245 (26.12%), Postives = 108/245 (44.08%), Query Frame = 2
Query:   83 CC-----ANPPTLNPNSGAGHVEKLGGLNAYVTGSPDSKLAVLLISDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHG--------DPYVADGGKPLQEWIKDHGVDKGFEEAKPVIQALKS--KGITAIGAAGFCWGAKVVVQLAKREFIQAAVLLHPSFVTVDDIKGVEVPLSIL-GAEIDRLSPPALVKEFEEALNAKSGVDSFVKIFPKVAHGW-TVRYNVEDETAVKAAEETHHNLLEWF 766
            CC     A P   N       ++ +GG+  Y TG   SK+ ++   DV+G  +  +++ AD++A     + +PDF +G        DP   +  +   ++++       + +   VI+ ++        IGA GFCWGAKV++    +E        HPS +   D K V  P+  L   + D     A  K FE   N+    +S+ + F K+ HGW   R N+ D    K  +  +   L++F
Sbjct:    3 CCPTKSGAAPTNRNYELQGEMLKDIGGMQTYFTGKRSSKVVLIGFMDVFGL-SKQIKEGADQLANHELAIYLPDFLNGETASIEMIDPKTIEQKEARSKFMEKISSPLHWPKLTKVIEDIERIHGQDVKIGAYGFCWGAKVLITYPNKERFLRIGCAHPSLLDPVDAKHVHCPVCFLCSKDEDPEEVDAWKKSFE---NSPYFSESYFETFGKMHHGWMAARANLSDPENRKYFDLGYQIFLKFF 243          
The following BLAST results are available for this feature:
BLAST of CF835401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
E134_MAIZE3.996e-3643.59Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=... [more]
CMBL_XENTR3.631e-2132.43Carboxymethylenebutenolidase homolog OS=Xenopus tr... [more]
CMBL_MOUSE6.194e-2132.14Carboxymethylenebutenolidase homolog OS=Mus muscul... [more]
CMBL_XENLA6.848e-2031.80Carboxymethylenebutenolidase homolog OS=Xenopus la... [more]
CMBL_HUMAN8.944e-2031.25Carboxymethylenebutenolidase homolog OS=Homo sapie... [more]
AIM2_YEAST1.168e-1930.08Protein AIM2 OS=Saccharomyces cerevisiae GN=AIM2 P... [more]
CMBL_PONAB1.526e-1931.25Carboxymethylenebutenolidase homolog OS=Pongo abel... [more]
CMBL_RAT7.571e-1931.25Carboxymethylenebutenolidase homolog OS=Rattus nor... [more]
YB4E_SCHPO2.134e-1327.51Uncharacterized AIM2 family protein C30D10.14 OS=S... [more]
YI7F_SCHPO1.059e-1226.12Uncharacterized AIM2 family protein C977.15 OS=Sch... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01C22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835401 ID=CF835401; Name=CF835401; organism=Citrus sinensis; type=EST; length=774bp
TCCCGATATCAGAAGAGAGTGTTTTCTAAACAGCTGTGCTTACTAAGGAA
GGTTGAGCAGAAGAAAAATGTCAGGTCCTCAGTGCTGTGCAAATCCACCG
ACATTGAATCCAAACAGTGGAGCAGGTCATGTTGAGAAACTTGGTGGACT
CAACGCTTATGTCACTGGCTCTCCTGATTCCAAGCTTGCCGTTCTTCTCA
TTTCCGACGTTTATGGTTATGAAGCTCCAAACTTGAGGAAGCTTGCAGAC
AAGGTTGCAGCAGCTGGATTCTACGTGGCAGTTCCTGACTTCTTTCATGG
GGATCCATATGTAGCTGATGGTGGGAAACCTCTACAAGAATGGATAAAAG
ATCATGGTGTGGATAAGGGATTTGAAGAGGCAAAGCCAGTTATTCAAGCT
CTTAAGAGTAAAGGTATAACTGCAATTGGGGCTGCGGGCTTCTGCTGGGG
CGCTAAAGTGGTTGTTCAACTAGCAAAACGTGAGTTCATCCAAGCTGCTG
TGCTGTTACATCCCTCTTTTGTCACTGTAGATGATATCAAGGGGGTTGAG
GTTCCCCTTTCAATTCTAGGAGCCGAAATTGATCGCTTGTCTCCACCAGC
TCTCGTGAAGGAATTTGAAGAAGCCTTAAATGCCAAATCTGGGGTTGATA
GCTTTGTGAAAATATTTCCTAAAGTGGCTCATGGATGGACAGTGAGATAT
AATGTAGAAGATGAAACTGCTGTGAAGGCTGCAGAGGAAACCCATCACAA
CTTGCTGGAGTGGTTTGCCAAGTA
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