CF835406

Overview
NameCF835406
Unique NameCF835406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length561
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3300 contig Csv1_Contig3300:203..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 5.315e-30
Identity = 52/85 (61.18%), Postives = 66/85 (77.65%), Query Frame = -1
Query:  187 TGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCFKVR 441
            + +LAPCI Y+R GG +P  CCNG+R++N  ARTTPDRQ ACNCLKQ + S+P +NPNNA  LP  CGV+IPY+IS ST+C  V+
Sbjct:   33 SSNLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          

HSP 2 Score: 29.261 bits (64), Expect = 5.315e-30
Identity = 15/28 (53.57%), Postives = 19/28 (67.86%), Query Frame = -3
Query:  446 AALKLVSALVLCMLVIGPLSGQAITCGQ 529
            A  KL   + LCM+V  P++ QAITCGQ
Sbjct:    5 AMTKLALVVALCMVVSVPIA-QAITCGQ 31          
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.006e-29
Identity = 57/85 (67.06%), Postives = 67/85 (78.82%), Query Frame = -1
Query:  187 TGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCFKVR 441
            T SLAPCI Y+RSGG +P  CCNG+R++N  ARTT DRQTACNCLK  AGSI  +NPNNA GLP  CGV++PYKIS ST+C  V+
Sbjct:   31 TSSLAPCIGYVRSGGAVPPACCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 2.896e-28
Identity = 55/85 (64.71%), Postives = 67/85 (78.82%), Query Frame = -1
Query:  187 TGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCFKVR 441
            + SLAPCI Y+R GG +P  CCNG+R++N  ARTTPDR+TACNCLKQ +GSI  +NPNNA  LP  CGV+IPYKIS ST+C  V+
Sbjct:    7 SSSLAPCIGYVRGGGAVPPACCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 8.427e-28
Identity = 53/85 (62.35%), Postives = 65/85 (76.47%), Query Frame = -1
Query:  187 TGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCFKVR 441
            + +LAPCI Y+R GG +P  CCNG+R++N  ARTTPDRQ ACNCLKQ + S+P +NPNNA  LP  CGV IPYKIS ST+C  V+
Sbjct:    7 SSALAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 3.937e-27
Identity = 56/86 (65.12%), Postives = 63/86 (73.26%), Query Frame = -1
Query:  187 TGSLAPCIVYLRSGGPIPVP-CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCFKVR 441
            T  L+PC+ YL +GGP P P CC GV+ L AAA TTPDRQ ACNCLK AAGSI  LN NNA  LP  CGV+IPYKIS ST+C  V+
Sbjct:   25 TSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          

HSP 2 Score: 28.8758 bits (63), Expect = 3.937e-27
Identity = 11/19 (57.89%), Postives = 16/19 (84.21%), Query Frame = -3
Query:  449 LVLCMLVIGPLSGQAITCG 505
            LV+CM+VI P++  AI+CG
Sbjct:    4 LVMCMVVIAPMAEGAISCG 22          
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.182e-27
Identity = 58/85 (68.24%), Postives = 64/85 (75.29%), Query Frame = -1
Query:  187 TGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCFKVR 441
            + SLAPCI YLR+GG +P  CCNGVRSLN AA+TT DRQ ACNCLK A  SI  LN N A GLP  CGVS+PYKIS STDC  V+
Sbjct:    7 SSSLAPCINYLRAGGVVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 5.059e-27
Identity = 56/86 (65.12%), Postives = 62/86 (72.09%), Query Frame = -1
Query:  187 TGSLAPCIVYLRSGGPIPVP-CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCFKVR 441
            T  L+PC+ YL +GGP P P CC GV+ L AAA TTPDRQ ACNCLK AAGSI  LN NNA  LP  CGV IPYKIS ST+C  V+
Sbjct:   33 TSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          

HSP 2 Score: 28.8758 bits (63), Expect = 5.059e-27
Identity = 11/19 (57.89%), Postives = 16/19 (84.21%), Query Frame = -3
Query:  449 LVLCMLVIGPLSGQAITCG 505
            LV+CM+VI P++  AI+CG
Sbjct:   12 LVMCMVVIAPMAEGAISCG 30          
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.084e-27
Identity = 52/83 (62.65%), Postives = 60/83 (72.29%), Query Frame = -1
Query:  187 SLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCFKVR 435
            +LAPC+ YL+ G      CC GVR+LN+AA TTPDRQ ACNCLK AAGSI  LN NNA  LP  C V+IPYKIS ST+C  +R
Sbjct:   33 ALAPCLGYLQGGPGPSAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          

HSP 2 Score: 31.9574 bits (71), Expect = 5.084e-27
Identity = 13/31 (41.94%), Postives = 22/31 (70.97%), Query Frame = -3
Query:  440 MAALKLVSALVLCMLVIGPLSGQAITCGQGD 532
            MA++K+V   ++  +VI P++  AITCG+ D
Sbjct:    1 MASMKVVCVALIMCIVIAPMAESAITCGRVD 31          
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.134e-27
Identity = 51/85 (60.00%), Postives = 66/85 (77.65%), Query Frame = -1
Query:  187 TGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCFKVR 441
            + +LAPCI Y++ GG +P  CCNG+R++N  ARTT DR+ ACNCLKQ +GSIP +NPNNA  LP  CGV++PYKIS ST+C  V+
Sbjct:    7 SSNLAPCINYVKGGGAVPPACCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 8.575e-27
Identity = 55/86 (63.95%), Postives = 63/86 (73.26%), Query Frame = -1
Query:  187 TGSLAPCIVYLRSGGPIPVP-CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCFKVR 441
            T  L+PC+ YL +GGP P P CC GV+ L AAA TTPDRQ ACNCLK AAGSI  LN NNA  LP  CGV+IPYKIS +T+C  V+
Sbjct:   33 TSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          

HSP 2 Score: 28.8758 bits (63), Expect = 8.575e-27
Identity = 11/19 (57.89%), Postives = 16/19 (84.21%), Query Frame = -3
Query:  449 LVLCMLVIGPLSGQAITCG 505
            LV+CM+VI P++  AI+CG
Sbjct:   12 LVICMVVIAPMAEGAISCG 30          
The following BLAST results are available for this feature:
BLAST of CF835406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
NLTP1_PRUDU5.315e-3061.18Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_MALDO2.006e-2967.06Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUAR2.896e-2864.71Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP1_PRUPE8.427e-2862.35Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP4_LENCU3.937e-2765.12Non-specific lipid-transfer protein 4 (Fragment) O... [more]
LTP1_MORNI4.182e-2768.24Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP6_LENCU5.059e-2765.12Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP_CICAR5.084e-2762.65Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP1_PRUDO7.134e-2760.00Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP2_LENCU8.575e-2763.95Non-specific lipid-transfer protein 2 OS=Lens culi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01D01_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835406 ID=CF835406; Name=CF835406; organism=Citrus sinensis; type=EST; length=561bp
CAAACTGACCATGACATGAAAACCCTAGACAATAAGACACAACATGAAAC
GAGGGCGGGAACGAGACTCGCAGTACAAAGTGTAGAGAGAGACTCCTAAT
TCGGACACAAAAATGTCCTTATTATTATACATTTATTCTACTCCGTCAAC
TTAAATATGAAAATCAACAGCCCAAATTCCTGTTCACCGGACCTTAAAGC
AGTCAGTGGAGATGCTGATCTTGTAAGGAATGCTGACTCCACAAGCTCGT
GGAAGACCAACAGCATTATTAGGGTTGAGGTTAGGGATTGATCCGGCGGC
TTGCTTCAAGCAGTTGCATGCAGTTTGGCGGTCAGGTGTGGTTCTGGCGG
CAGCGTTGAGAGACCTGACGCCGTTGCAGCATGGCACAGGTATAGGGCCG
CCCGATCTCAAGTAAACGATGCATGGTGCCAATGAGCCAGTCACCCTGCC
CACATGTTATGGCCTGACCACTCAGGGGACCAATCACCAACATGCACAGA
ACCAAAGCTGAAACAAGCTTGAGGGCAGCCATTTGAGATTTCCTCCTGAG
ATTTTCTTTTT
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