CF835408

Overview
NameCF835408
Unique NameCF835408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10867 contig Csv1_Contig10867:1072..1788. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835408 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.303e-22
Identity = 66/168 (39.29%), Postives = 93/168 (55.36%), Query Frame = -2
Query:  223 LIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMDEA-GDGGIIVDCGTAITRLQTQAYNSLRDFFVRLGGNLKPPSGVAL-FDTCYDF-SGLRSVRVPTVSLHFGAGKAFDLPPKNYLIPVDSAGTFCFAFAPTSSVMSIIGNVQQQGTRVSFDLGNNRVGFTPNKC 717
            LI++ ++ TFYY+ L G SVG   + I PS F ++   G GGII+D GT +T     AY S+R  F+    NL   +G +  FD C+   S   ++++PT  +HF  G   +LP +NY I   S G  C A   +S  MSI GN+QQQ   V +D GN+ V F   +C
Sbjct:  270 LIQSSQIPTFYYITLNGLSVGSTRLPIDPSAFALNSNNGTGGIIIDSGTTLTYFVNNAYQSVRQEFISQI-NLPVVNGSSSGFDLCFQTPSDPSNLQIPTFVMHFDGGD-LELPSENYFIS-PSNGLICLAMGSSSQGMSIFGNIQQQNMLVVYDTGNSVVSFASAQC 434          
BLAST of CF835408 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 63/170 (37.06%), Postives = 95/170 (55.88%), Query Frame = -2
Query:  223 LIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMDEAGDGGIIVDCGTAITRLQTQAYNSLRDFF---VRLGGNLKPPSGVALFDTCYDF-SGLRSVRVPTVSLHFGAGKAFDLPPKNYLIPVDSAGTFCFAFAPTSSV-MSIIGNVQQQGTRVSFDLGNNRVGFTPNKC 717
            LI +    T+YY+ L G +VGG  + IP S F++ + G GG+I+D GT +T L   AYN++   F   + L    +  SG++   TC+   S   +V+VP +S+ F  G   +L  +N LI   + G  C A   +S + +SI GN+QQQ T+V +DL N  V F P +C
Sbjct:  271 LIHSSLNPTYYYITLQGITVGGDNLGIPSSTFQLQDDGTGGMIIDSGTTLTYLPQDAYNAVAQAFTDQINLPTVDESSSGLS---TCFQQPSDGSTVQVPEISMQFDGG-VLNLGEQNILIS-PAEGVICLAMGSSSQLGISIFGNIQQQETQVLYDLQNLAVSFVPTQC 435          
The following BLAST results are available for this feature:
BLAST of CF835408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NEP1_NEPGR1.303e-2239.29Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
NEP2_NEPGR3.549e-2037.06Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01D03_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835408 ID=CF835408; Name=CF835408; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTAAGCCTAATGCAATTTATTGAGGGGGATCCCAC
TTTCATCCACCACCAGTCAACAACGCTACTTTAACGCAACATCTTTCAGT
TCATTCTCCTAACAATTAAAAGGGGTATAAAAGTTTCTCCTAACAAATAA
ACAGCTAACAGTCCCCTTTTTCTACCAATTACCAGGGGTAACAAGGGAAT
TATGGGTTCCGAAAAATGCCTAACACTTATTGGGAGTGAACCCCACGCGA
TTGTTCCCCAAATCAAAACTGACACGTGTTCCCTGTTGCTGCACGTTGCC
AATAATTGACATAACCGACGACGTTGGAGCGAATGCGAAACAAAAAGTCC
CAGCCGAGTCTACTGGAATCAAGTAATTTTTGGGGGGTAAATCAAAAGCT
TTTCCAGCACCGAAGTGAAGCGACACCGTTGGGACCCTAACACTCCTTAA
TCCGGAAAAATCGTAGCACGTGTCGAATAAAGCGACCCCGCTGGGGGGTT
TCAAGTTACCCCCCAGCCTGACAAAAAAATCCCGGAGCGAGTTGTAGGCC
TGAGTCTGCAGGCGAGTTATGGCGGTTCCACAATCAACAATAATCCCGCC
GTCGCCTGCTTCGTCCATTTCAAAAAGCGATGGTGGGATTTGGACCGCCT
GACCACCGACGCTGAATCCAGTGAGCCCCACGTAATAAAACGTGTCAACT
TTTTTGTTCCTAATCAAC
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