CF835409

Overview
NameCF835409
Unique NameCF835409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10867 contig Csv1_Contig10867:179..981. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835409 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.392e-32
Identity = 70/160 (43.75%), Postives = 98/160 (61.25%), Query Frame = 1
Query:  253 ITKLQLAIYNVDR--HELKPAEAQIL-PEDFSTPVVSGASQGSGEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVSACRANRCLYQVAYGDGSYTVGDLVTETVSFGNSGSVKGIALGCGHDNE 723
            +TK QL    ++R    L+  EA +  P    T V +G     GEY   + +GTP + FS ++DTGSD+ W QC+PCT+C+ QS PIF+P+ SSS+S LPC++  C++L    C  N C Y   YGDGS T G + TET++FG S S+  I  GCG +N+
Sbjct:   54 LTKFQLLERAIERGSRRLQRLEAMLNGPSGVETSVYAG----DGEYLMNLSIGTPAQPFSAIMDTGSDLIWTQCQPCTQCFNQSTPIFNPQGSSSFSTLPCSSQLCQALSSPTCSNNFCQYTYGYGDGSETQGSMGTETLTFG-SVSIPNITFGCGENNQ 208          
BLAST of CF835409 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.090e-31
Identity = 69/160 (43.12%), Postives = 91/160 (56.88%), Query Frame = 1
Query:  253 ITKLQLAIYNVDRHELKPAEAQILPEDFS---TPVVSGASQGSGEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVSACRANRCLYQVAYGDGSYTVGDLVTETVSFGNSGSVKGIALGCGHDNE 723
            +TK +L    + R E +      + +  S   TPV +G     GEY   + +GTP   FS ++DTGSD+ W QC PCT+C+ Q  PIF+P+ SSS+S LPC +  C+ L    C  N C Y   YGDGS T G + TET +F  S SV  IA GCG DN+
Sbjct:   55 LTKYELIKRAIKRGERRMRSINAMLQSSSGIETPVYAG----DGEYLMNVAIGTPDSSFSAIMDTGSDLIWTQCEPCTQCFSQPTPIFNPQDSSSFSTLPCESQYCQDLPSETCNNNECQYTYGYGDGSTTQGYMATETFTFETS-SVPNIAFGCGEDNQ 209          
BLAST of CF835409 vs. ExPASy Swiss-Prot
Match: NEP1_NEPDI (Aspartic proteinase nepenthesin-1 (Fragments) OS=Nepenthes distillatoria PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.933e-12
Identity = 45/115 (39.13%), Postives = 59/115 (51.30%), Query Frame = 1
Query:  367 GSGEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVSACRANRCLYQVAYGDGSYTVGDLVTETVSFGNSGSVKGIALGCG 711
            G GEY   + +GTP + FS ++DTGSD+ W Q +P T+ + QS    DP+ SSS+S LPC                       YGD S T G + TET +FG S S+  I  G G
Sbjct:   13 GDGEYLMXLSIGTPAQPFSAIMDTGSDLIWTQXQPXTQXFXQS----DPQGSSSFSTLPC----------------------GYGD-SETQGSMGTETFTFG-SVSIPNITFGXG 99          
BLAST of CF835409 vs. ExPASy Swiss-Prot
Match: ASPL2_ARATH (Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.637e-11
Identity = 39/129 (30.23%), Postives = 69/129 (53.49%), Query Frame = 1
Query:  373 GEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSD-----PIFDPKTSSSYSPLPCAAPQCKSLDVS-ACR-ANRCLYQVAYGDGSYTVGDLVTETVSFGN-SGSVK------GIALGCGHD 717
            G YF++I +G+PP+++ + +DTGSDI W+ C+PC +C  +++      +FD   SS+   + C    C  +  S +C+ A  C Y + Y D S + G  + + ++    +G +K       +  GCG D
Sbjct:   72 GLYFTKIKLGSPPKEYHVQVDTGSDILWINCKPCPKCPTKTNLNFRLSLFDMNASSTSKKVGCDDDFCSFISQSDSCQPALGCSYHIVYADESTSDGKFIRDMLTLEQVTGDLKTGPLGQEVVFGCGSD 200          
The following BLAST results are available for this feature:
BLAST of CF835409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
NEP1_NEPGR6.392e-3243.75Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
NEP2_NEPGR1.090e-3143.13Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
NEP1_NEPDI1.933e-1239.13Aspartic proteinase nepenthesin-1 (Fragments) OS=N... [more]
ASPL2_ARATH1.637e-1130.23Aspartic proteinase-like protein 2 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01D03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835409 ID=CF835409; Name=CF835409; organism=Citrus sinensis; type=EST; length=803bp
ACCGCCACGACCTTTCTCGACGTGTCGTCCGCACTTCAGCAGACCGAACA
CCTCCTCTCCTTCGAGCCCGAGACGCTTGAACCATTCGCTGAGGAGTCAG
AGACAGCAGCAGAGTCTTTTCCTCTCAACTCTTCTTCTTCGTTCTCATTG
CCGCTTCACTCGCGTGAAATCCTCCATAAGACGAGACACAATGATTACAG
ATCACTTGTTTTATCTCGACTCGAGCGCGACTCAGCCCGAGTCAACACTC
TTATCACGAAACTCCAGCTGGCTATCTACAACGTAGACAGGCACGAGCTC
AAGCCCGCCGAGGCACAGATCTTGCCGGAGGATTTCTCCACTCCGGTCGT
GTCCGGTGCCAGCCAGGGCAGCGGCGAATACTTCTCCCGAATTGGCGTCG
GTACGCCGCCGAGACAGTTCTCTATGGTGCTCGACACCGGCAGTGACATT
AACTGGCTTCAGTGCCGGCCTTGTACCGAGTGTTATCAACAATCCGATCC
GATTTTTGACCCAAAAACGTCATCGTCTTACAGTCCTCTCCCGTGTGCCG
CTCCTCAGTGTAAATCCCTCGACGTGTCCGCTTGTCGTGCGAACAGGTGC
CTCTACCAAGTGGCGTACGGTGATGGATCTTATACCGTGGGTGATTTGGT
GACTGAAACGGTGTCGTTTGGAAACAGCGGGAGCGTGAAGGGTATCGCTT
TGGGTTGCGGTCATGATAATGAAGGGCTCTTTGTTGGATCTGCCGGCTTG
CTTGGACTTGGGGGTGGCATGCTCTCTCTTACTAGGCAAATTAAAGCGAT
GTC
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