CF835413

Overview
NameCF835413
Unique NameCF835413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: DRP1C_ARATH (Dynamin-related protein 1C OS=Arabidopsis thaliana GN=DRP1C PE=1 SV=2)

HSP 1 Score: 360.147 bits (923), Expect = 7.398e-99
Identity = 186/215 (86.51%), Postives = 194/215 (90.23%), Query Frame = 2
Query:  131 MATMTSLIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGT-DYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            MATM SLIGLINKIQRACTVLGDHGGEGMSLWEALP               LESVVGRDFLPRGSGIVTRRPLVLQLH+TE GT +YAEFLHAP+K+F DFAAVRKEI DETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAV+GQPESIV+DIENMVRSYVEKP+CIILAISPANQDIATSDAIKLAREVDP+GERTFGV TKLD
Sbjct:    1 MATMKSLIGLINKIQRACTVLGDHGGEGMSLWEALPTVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGTTEYAEFLHAPKKRFADFAAVRKEIEDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYVEKPNCIILAISPANQDIATSDAIKLAREVDPTGERTFGVATKLD 215          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: DRP1E_ARATH (Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 7.673e-88
Identity = 167/220 (75.91%), Postives = 187/220 (85.00%), Query Frame = 2
Query:  131 MATMTSLIGLINKIQRACTVLGDHGGEG-----MSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTD-YAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            M TM SLIGL+N+IQRACTVLGD+GG        SLWEALP               LES+VGRDFLPRGSGIVTRRPLVLQLH+T+ GT+ YAEFLH P+K+FTDFA VR+EI DETDRITGK+KQIS +PI LSIYSPNVVNLTLIDLPGLTKVAVEGQPE+I EDIE+MVR+YV+KP+CIILAISPANQDIATSDAIKLA++VDP+GERTFGVLTKLD
Sbjct:    1 MTTMESLIGLVNRIQRACTVLGDYGGGTGSNAFNSLWEALPTVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTDDGTEEYAEFLHLPKKQFTDFALVRREIQDETDRITGKNKQISPVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPETIAEDIESMVRTYVDKPNCIILAISPANQDIATSDAIKLAKDVDPTGERTFGVLTKLD 220          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: DRP1D_ARATH (Dynamin-related protein 1D OS=Arabidopsis thaliana GN=DRP1D PE=2 SV=2)

HSP 1 Score: 316.235 bits (809), Expect = 1.225e-85
Identity = 166/215 (77.21%), Postives = 182/215 (84.65%), Query Frame = 2
Query:  140 MTSLIGLINKIQRACTVLGDHGGEG---MSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGT-DYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            M SLI LIN IQRACTV+GDHGG+     SLWEALP               LES+VGRDFLPRGSGIVTRRPLVLQLH+TE GT D AEFLH   KKFT+F+ VRKEI DETDRITGK+KQIS+IPI LSI+SPNVVNLTLIDLPGLTKVAVEGQPE+IVEDIE+MVRSYVEKP+C+ILAISPANQDIATSDA+KLA+EVDP G+RTFGVLTKLD
Sbjct:    1 MESLIVLINTIQRACTVVGDHGGDSNALSSLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTENGTEDNAEFLHLTNKKFTNFSLVRKEIEDETDRITGKNKQISSIPIHLSIFSPNVVNLTLIDLPGLTKVAVEGQPETIVEDIESMVRSYVEKPNCLILAISPANQDIATSDAMKLAKEVDPIGDRTFGVLTKLD 215          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: DRP1A_ARATH (Dynamin-related protein 1A OS=Arabidopsis thaliana GN=DRP1A PE=1 SV=3)

HSP 1 Score: 308.916 bits (790), Expect = 1.956e-83
Identity = 157/214 (73.36%), Postives = 180/214 (84.11%), Query Frame = 2
Query:  140 MTSLIGLINKIQRACTVLGDHGGEGM--SLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGT-DYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            M +LI L+NKIQRACT LGDHG      +LW++LP               LES+VG+DFLPRGSGIVTRRPLVLQL + + GT +YAEFLH PRKKFTDFAAVRKEI DETDR TG+SK IS++PI LSIYSPNVVNLTLIDLPGLTKVAV+GQ +SIV+DIENMVRSY+EKP+CIILAISPANQD+ATSDAIK++REVDPSG+RTFGVLTK+D
Sbjct:    1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: SDLCA_SOYBN (Dynamin-related protein 12A OS=Glycine max PE=1 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.554e-83
Identity = 156/214 (72.90%), Postives = 180/214 (84.11%), Query Frame = 2
Query:  140 MTSLIGLINKIQRACTVLGDHGGEGM--SLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSGIVTRRPLVLQLHQT-EGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            M +LI L+NKIQRACT LGDHG      +LW++LP               LESVVG+DFLPRGSGIVTRRPLVLQLH+  EG  +YAEFLH PRK+FTDF AVRKEI DETDR TG++KQIS++PI LSIYSPNVVNLTLIDLPGLTKVAVEGQP+SIV+DIE+MVRSY+EKP+CIILAISPANQD+ATSDAIK++REVDP+G+RT GVLTK+D
Sbjct:    1 MENLISLVNKIQRACTALGDHGENSALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIDEGSREYAEFLHLPRKRFTDFVAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVKDIEDMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGDRTIGVLTKID 214          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: SDL5A_SOYBN (Dynamin-related protein 5A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 4.357e-83
Identity = 155/214 (72.43%), Postives = 180/214 (84.11%), Query Frame = 2
Query:  140 MTSLIGLINKIQRACTVLGDHGGEGM--SLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGT-DYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            M +LI L+NKIQRACT LGDHG      +LW++LP               LESVVG+DFLPRGSGIVTRRPLVLQLH+ E G+ +YAEFLH PRK+FTDF AVRKEI DETDR TG++KQIS +PI LSIYSPNVVNLTL+DLPGLTKVAVEGQP+SIV+DIE+MVRSY+EKP+CIILAISPANQD+ATSDAIK++REVDP+G+RT GVLTK+D
Sbjct:    1 MENLISLVNKIQRACTALGDHGENSALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIEEGSREYAEFLHLPRKRFTDFVAVRKEIQDETDRETGRTKQISTVPIHLSIYSPNVVNLTLVDLPGLTKVAVEGQPDSIVKDIEDMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGDRTIGVLTKID 214          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: DRP1B_ARATH (Dynamin-related protein 1B OS=Arabidopsis thaliana GN=DRP1B PE=2 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 5.690e-83
Identity = 157/215 (73.02%), Postives = 182/215 (84.65%), Query Frame = 2
Query:  140 MTSLIGLINKIQRACTVLGDHGGEGMSL---WEALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKS-KQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            M SLI L+NKIQRACT LGDHG EG SL   W++LP               LESVVG+DFLPRG+GIVTRRPLVLQLH+ + G +YAEF+H P+KKFTDFAAVR+EISDETDR TG+S K IS +PI LSI+SPNVVNLTL+DLPGLTKVAV+GQPESIV+DIENMVRS++EKP+CIILAISPANQD+ATSDAIK++REVDP G+RTFGVLTK+D
Sbjct:    1 MESLIALVNKIQRACTALGDHG-EGSSLPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGAGIVTRRPLVLQLHRIDEGKEYAEFMHLPKKKFTDFAAVRQEISDETDRETGRSSKVISTVPIHLSIFSPNVVNLTLVDLPGLTKVAVDGQPESIVQDIENMVRSFIEKPNCIILAISPANQDLATSDAIKISREVDPKGDRTFGVLTKID 214          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: DYN_DROME (Dynamin OS=Drosophila melanogaster GN=shi PE=1 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 6.335e-58
Identity = 120/211 (56.87%), Postives = 148/211 (70.14%), Query Frame = 2
Query:  140 MTSLIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            M SLI ++NK+Q A T LG H    M L   LP               LE+ VG+DFLPRGSGIVTRRPL+LQL    G T+Y EFLH   KKF+ F  +RKEI DETDR+TG +K ISNIPI L +YSP+V+NLTLIDLPGLTKVA+  QP  I + I+ M+  ++ K +C+ILA++PAN D+A SDA+KLA+EVDP G RT GV+TKLD
Sbjct:    1 MDSLITIVNKLQDAFTSLGVH----MQL--DLPQIAVVGGQSAGKSSVLENFVGKDFLPRGSGIVTRRPLILQL--INGVTEYGEFLHIKGKKFSSFDEIRKEIEDETDRVTGSNKGISNIPINLRVYSPHVLNLTLIDLPGLTKVAIGDQPVDIEQQIKQMIFQFIRKETCLILAVTPANTDLANSDALKLAKEVDPQGVRTIGVITKLD 203          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: DYN1_CAEEL (Dynamin OS=Caenorhabditis elegans GN=dyn-1 PE=1 SV=3)

HSP 1 Score: 215.312 bits (547), Expect = 2.943e-55
Identity = 116/211 (54.98%), Postives = 147/211 (69.67%), Query Frame = 2
Query:  140 MTSLIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            M +LI +IN++Q A + LG       S+   LP               LE+ VG+DFLPRGSGIVTRRPL+LQL Q     +YAEFLH    +F DF AVRKEI DETDR+TG++K IS  PI L ++SPNV+NLTLIDLPGLTKV V  QP  I + I +M+ +++ + +C+ILA++PAN D+ATSDA+KLA+EVDP G RT GVLTKLD
Sbjct:    8 MQALIPVINRVQDAFSQLGT------SVSFELPQIAVVGGQSAGKSSVLENFVGKDFLPRGSGIVTRRPLILQLIQDRN--EYAEFLHKKGHRFVDFDAVRKEIEDETDRVTGQNKGISPHPINLRVFSPNVLNLTLIDLPGLTKVPVGDQPADIEQQIRDMILTFINRETCLILAVTPANSDLATSDALKLAKEVDPQGLRTIGVLTKLD 210          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: DYN1_RAT (Dynamin-1 OS=Rattus norvegicus GN=Dnm1 PE=1 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 8.563e-55
Identity = 114/211 (54.03%), Postives = 142/211 (67.30%), Query Frame = 2
Query:  140 MTSLIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            M  LI L+N++Q A + +G +          LP               LE+ VGRDFLPRGSGIVTRRPLVLQL      T+YAEFLH   KKFTDF  VR EI  ETDR+TG +K IS +PI L +YSP+V+NLTL+DLPG+TKV V  QP  I   I +M+  +V K +C+ILA+SPAN D+A SDA+K+A+EVDP G+RT GV+TKLD
Sbjct:    6 MEDLIPLVNRLQDAFSAIGQNADLD------LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL--VNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 208          
The following BLAST results are available for this feature:
BLAST of CF835413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
DRP1C_ARATH7.398e-9986.51Dynamin-related protein 1C OS=Arabidopsis thaliana... [more]
DRP1E_ARATH7.673e-8875.91Dynamin-related protein 1E OS=Arabidopsis thaliana... [more]
DRP1D_ARATH1.225e-8577.21Dynamin-related protein 1D OS=Arabidopsis thaliana... [more]
DRP1A_ARATH1.956e-8373.36Dynamin-related protein 1A OS=Arabidopsis thaliana... [more]
SDLCA_SOYBN2.554e-8372.90Dynamin-related protein 12A OS=Glycine max PE=1 SV... [more]
SDL5A_SOYBN4.357e-8372.43Dynamin-related protein 5A OS=Glycine max PE=2 SV=... [more]
DRP1B_ARATH5.690e-8373.02Dynamin-related protein 1B OS=Arabidopsis thaliana... [more]
DYN_DROME6.335e-5856.87Dynamin OS=Drosophila melanogaster GN=shi PE=1 SV=... [more]
DYN1_CAEEL2.943e-5554.98Dynamin OS=Caenorhabditis elegans GN=dyn-1 PE=1 SV... [more]
DYN1_RAT8.563e-5554.03Dynamin-1 OS=Rattus norvegicus GN=Dnm1 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01D06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835413 ID=CF835413; Name=CF835413; organism=Citrus sinensis; type=EST; length=773bp
CTTTGCTTTGCTCTCTGCACCTAAACCCATCTGCATCTTTGATCCCGCAT
TGCCTTACTTCTCTGATCCAAATCTTCGCATTTCTTGATCCAAGACCACA
AAAAAAGAAAAAAAAAAAGAAAAAGAAAAAATGGCGACGATGACGAGCTT
GATTGGTCTCATCAACAAAATCCAAAGAGCTTGTACTGTCTTAGGTGATC
ATGGCGGCGAGGGCATGTCCCTCTGGGAGGCTCTGCCTTCTGTCGCTGTT
GTTGGTGGCCAGAGTTCCGGTAAATCTTCGGTTTTGGAAAGCGTTGTTGG
GAGAGATTTTCTGCCTCGTGGATCCGGTATTGTCACAAGGAGGCCATTAG
TGCTGCAACTTCATCAGACAGAAGGGGGAACTGATTATGCAGAGTTTCTT
CATGCACCAAGGAAGAAGTTTACTGATTTTGCTGCTGTGCGTAAGGAGAT
ATCAGATGAAACAGATCGCATAACTGGAAAGTCAAAGCAGATCTCTAACA
TTCCTATTCAACTAAGCATATATTCTCCAAATGTTGTTAACTTAACCCTG
ATAGACCTTCCTGGCTTGACAAAGGTTGCTGTAGAGGGCCAGCCAGAGTC
TATAGTTGAAGATATTGAGAATATGGTTCGTTCTTATGTTGAGAAGCCCA
GCTGCATTATATTGGCCATTTCCCCTGCAAATCAAGATATTGCTACTTCA
GACGCTATAAAGCTGGCCAGAGAAGTTGATCCATCAGGTGAAAGAACATT
TGGAGTGCTAACAAAACTTGATC
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