CF835426

Overview
NameCF835426
Unique NameCF835426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10937 contig Csv1_Contig10937:249..1111. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF835426 vs. ExPASy Swiss-Prot
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 5.444e-56
Identity = 114/226 (50.44%), Postives = 135/226 (59.73%), Query Frame = -2 
Query:  227 ALTNDVDEFYGLCDPDKENLCLYGHPNESWXXXXXXXXXXXXXXXXXLGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGAR--LNRNERKRLFSLINDQPTVFEVVTERXXXXXXXXXXXXXXXXXXXXXSNDGQVKSNPKLA------------XXXXXXXXXXXXETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAENIKQYKCPSCSMKRGR 862
            ALT DV EF+ LCDP+KENLCLYGHPNE W                 LGINFARDGM  KDWLSLVAVH+D+WLL+VAF+ GAR   ++ +RKRLF+++ND PT+FEVV                        S+    +S  K +                        ET CG+CG +Y ADEFWI CD+CE WFHGKCVKITPA+AE+IKQYKCPSCS KR R
Sbjct:   29 ALTTDVQEFFRLCDPEKENLCLYGHPNEHWEVNLPAEEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGARFGFDKADRKRLFNMVNDLPTIFEVVAGTAKKQGKDKSSVSNNSSNRSKSSSKRGSESRAKFSKPEPKDDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKRAR 254
The following BLAST results are available for this feature:
BLAST of CF835426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5621_ARATH5.444e-5650.44PHD finger protein At5g26210 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01A05_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835426 ID=CF835426; Name=CF835426; organism=Citrus sinensis; type=EST; length=863bp
TTTTTTTTTTTTTTTTTAATAACAAATTCTAATATTTATAAGTCAAAATC
TTAAGGATTCATCTGGGCAGAAGCCCTTCAAAGCAACTTGTATGAACAAA
CATCACGACAAATTCATTACATAACTTTTTTAACTTTTAAAAGTTGACAT
TTCTATACTATGTCAGCCACAGAGGAACGCTCTTTGAACCACTCCAATGG
TAAATCGGTTTTAAAGACTACTACTGCCTGCCTCTCTTCATGCTGCAAGA
TGGGCATTTGTATTGCTTAATATTCTCAGCCTTAGCGGGTGTTATCTTCA
CACACTTCCCATGGAACCACCTCTCACAGATGTCACAGCCAATCCAAAAC
TCATCTGCGTTGTAATTTCCACCACAGCTGCCACAAAGTGTTTCACTATG
TTCATCCTCCTCGTCATCGAAACTCTCATCTGCTAGCTTAGGGTTACTTT
TCACTTGGCCATCATTTGATCTCTTAGTGCTGCCGCGAGATTTGCTGCTA
CTATCCACACTGGGTTTATCTTTTATAGGCTTCCTTTCTGTTACAACTTC
AAACACAGTAGGTTGATCATTGATCAAGCTAAACAGACGTTTCCTTTCAT
TGCGGTTAAGACGAGCTCCAAGATAAAAAGCCACTGAAAGCAACCATGAA
TCAGTGTGCACTGCAACCAAAGACAGCCAGTCCTTCCTGTTCATCCCATC
TCTCGCAAAATTAATCCCAAGTGCCGGCTCAGGAAGCTCCGGCGGAACTT
CCTCTGCCGGCAACGTCACTTCCCACGACTCATTAGGATGGCCGTACAAG
CACAGATTCTCCTTATCTGGATCGCAGAGTCCGTAAAATTCATCGACATC
GTTAGTTAAAGCG
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