CF835427

Overview
NameCF835427
Unique NameCF835427
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10937 contig Csv1_Contig10937:14..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835427 vs. ExPASy Swiss-Prot
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.158e-41
Identity = 79/132 (59.85%), Postives = 99/132 (75.00%), Query Frame = 3
Query:  168 ASSPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWXXXXXXXXXXXXXXXXXXGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGAR--LNRNERKRLFSLINDQPTVFEVV 557
            A +PRTVEE+++DF  RRAG+++ALT DV EF+ LCDP+KENLCLYGHPNE W                  GINFARDGM  KDWLSLVAVH+D+WLL+VAF+ GAR   ++ +RKRLF+++ND PT+FEVV
Sbjct:    6 AYNPRTVEEVFRDFKGRRAGMIKALTTDVQEFFRLCDPEKENLCLYGHPNEHWEVNLPAEEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGARFGFDKADRKRLFNMVNDLPTIFEVV 137          
The following BLAST results are available for this feature:
BLAST of CF835427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5621_ARATH1.158e-4159.85PHD finger protein At5g26210 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01A05_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835427 ID=CF835427; Name=CF835427; organism=Citrus sinensis; type=EST; length=686bp
TTCTTCGATACCATCTCGTCTCCTCGACTCGATCTCCATGGTCTCACCGT
ACCCTTACTCTAATTCAAATTCCTCCAGTTCGTCCAATTCGCTCCTCTAA
TTAAATCCAATTTAATAGAATCTCACTTACTAATTAGATCTCCAATATTT
GCTTTGCTATGGAAATGGCCTCCAGCCCCCGCACCGTGGAGGAGATCTAC
AAAGATTTCTGCGCTCGTAGAGCCGGCGTTGTTCGCGCTTTAACTAACGA
TGTCGATGAATTTTACGGACTCTGCGATCCAGATAAGGAGAATCTGTGCT
TGTACGGCCATCCTAATGAGTCGTGGGAAGTGACGTTGCCGGCAGAGGAA
GTTCCGCCGGAGCTTCCTGAGCCGGCACTTGGGATTAATTTTGCGAGAGA
TGGGATGAACAGGAAGGACTGGCTGTCTTTGGTTGCAGTGCACACTGATT
CATGGTTGCTTTCAGTGGCTTTTTATCTTGGAGCTCGTCTTAACCGCAAT
GAAAGGAAACGTCTGTTTAGCTTGATCAATGATCAACCTACTGTGTTTGA
AGTTGTAACAGAAAGGAAGCCTATAAAAGATAAACCCAGTGTGGATAGTA
GCAGCAAATCTCGCGGCAGCACTAAGAGATCAAATGATGGCCCAGTGAAA
AGTAACCCTAAGCTAGCAGATGAGAGTTTCGATGAC
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