CF835429

Overview
NameCF835429
Unique NameCF835429
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig756 contig Csv1_Contig756:328..876. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF835429 vs. ExPASy Swiss-Prot
Match: Y4844_ARATH (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.809e-17
Identity = 40/52 (76.92%), Postives = 47/52 (90.38%), Query Frame = 2 
Query:    5 TVILRNAKIDMFKGSMRLAVDKWGRVEVAEPANFTVKEDNNLSLIEYELVNV 160
            TVILRN++IDMFKG+MRL VDKWGR+E    A+FTVKEDNNLSL+EYEL+NV
Sbjct:   98 TVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDNNLSLVEYELINV 149
The following BLAST results are available for this feature:
BLAST of CF835429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4844_ARATH2.809e-1776.92Uncharacterized protein At4g28440 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01A06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835429 ID=CF835429; Name=CF835429; organism=Citrus sinensis; type=EST; length=549bp
TACTACTGTGATTCTGCGCAATGCAAAAATTGACATGTTTAAAGGATCAA
TGAGACTTGCTGTGGACAAGTGGGGCCGTGTTGAAGTTGCAGAGCCTGCC
AATTTCACCGTGAAGGAAGATAACAACCTCTCTCTGATTGAATATGAGCT
TGTGAATGTTGTAGAAGAGTGAATTTCTGGACAGTGTTCACTTACTCACT
GCAATGTGACCCAAGAATAAAAAGAAATCCAGCATATCATAGTACTGTCG
TTTATGCGGCATCTCCTGCCCAAAACTGTGTTGCCTTTAGGAAGAAGAAA
TCTGGAAGCTATTACTACCCAAGATGCTTTCTACCGTTGTGGCAGATCCA
GTAGAACCTTTTGATTGGACCTCCAAACAGATGGTGATGGCTCTAAAGTT
GATAAGTTAAAGCAGCTGGCATTTAGAACTGTCTTTGGTTTGTTTGCGAC
CTATTTATTTTTGGAACTCAACTGTTCTTTGGCTATTAGATTATACTTGG
AATATTAATATCGTGAAATGTATGTTATTATATAAAAAAAAAAAAAAAA
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